PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g24810
Common NameGSCOC_T00028837001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 297aa    MW: 31980.8 Da    PI: 6.5857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g24810genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-18108158256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Cc02_g24810 108 TYRGVRKRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 158
                  69****887.**********843...6***********************99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.108.0E-32108166IPR001471AP2/ERF domain
SMARTSM003802.8E-35108171IPR001471AP2/ERF domain
PROSITE profilePS5103223.709108165IPR001471AP2/ERF domain
PfamPF008472.7E-13108158IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22108166IPR016177DNA-binding domain
PRINTSPR003671.6E-10109120IPR001471AP2/ERF domain
CDDcd000181.05E-30109165No hitNo description
PRINTSPR003671.6E-10131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGKQINIGSL ANHDSNLSSS STTTTTTTSS SSSFSTTSNA LNSPSTTSTS SSSSSSNQST  60
KATTSTRTAK AGKAQESSQE LQQVAKINGN ENQPRKKHKN GDDEKHPTYR GVRKRNWGKW  120
VSEIREPRKK SRIWLGTYPT AEMAARAHDV AALAIKGHSA YLNFPRLAHE LPRPATTSPK  180
DIQAAAAKAA AATFPGENGG GAEAEPIQAE LTNCHSSTDF SLHNMQESSN SASTDDDIDD  240
TFFDLPDLSF DVTGATDHLD GFNCFHGSSS WWPQLHLAPA AEPVFRLEEP FLWECY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-171051651172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7435430.0KF743543.1 Coffea arabica ERF transcription factor 04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106538.11e-169ethylene-responsive transcription factor ERF038-like
SwissprotQ8LBQ72e-58ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A068UMC90.0A0A068UMC9_COFCA; Uncharacterized protein
STRINGXP_009771308.13e-78(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-48ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]