PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g24550
Common NameGSCOC_T00028870001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family SBP
Protein Properties Length: 454aa    MW: 49025.5 Da    PI: 8.1936
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g24550genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-40212289178
                  --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  +Cqv+gC++ l +ak+yhrrhkvCe+hskap+v+v gleqrfCqqCsrfh+++efDe+krsCrrrLa+hnerrrk+++
  Cc02_g24550 212 RCQVDGCHVALLNAKDYHRRHKVCEQHSKAPKVVVLGLEQRFCQQCSRFHAVEEFDESKRSCRRRLAGHNERRRKSSQ 289
                  6**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.9E-34208274IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.342210287IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-38211290IPR004333Transcription factor, SBP-box
PfamPF031106.9E-32213286IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MENGWDLFNI TTNNNLIGKT HHHNNSSNSS NNNNNTNCTS DSNNARAMWD SGTIATPKID  60
WNTNNLDKSS SFFNLDNTPA PTAAAVIASQ QEEKGAVHAL MFDNVSSSPF PSCLYGRGGG  120
GGGSHPQCCY PDPHLMCLKL GKRHYFGDAA APLGDRQGAA AGGFSMTTKR GKPYYDAAAG  180
LLVGPSTMTA AAAAAAAAAG ATVAVTPAAV PRCQVDGCHV ALLNAKDYHR RHKVCEQHSK  240
APKVVVLGLE QRFCQQCSRF HAVEEFDESK RSCRRRLAGH NERRRKSSQD QSAPRNQTQV  300
NGKLMTCSGR HPYYPLSSGC ALSLLSSKND SWISSADLPA RCSAALRELI AENRAAILAR  360
QLILDKEWHW HNHPTEDLNS ARQNGSNAFA NYQQLMATGS HSWDRINEAG EHVTLDLMQA  420
PNSAFSFLSM RGKSKEDEEC PGLWGSFGGA HVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-302132861184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027162745.10.0squamosa promoter-binding-like protein 7
TrEMBLA0A068UPD10.0A0A068UPD1_COFCA; Uncharacterized protein
STRINGEOX963621e-118(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA134081417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.49e-36squamosa promoter binding protein-like 10