PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g23700
Common NameGSCOC_T00015073001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ZF-HD
Protein Properties Length: 300aa    MW: 32606.8 Da    PI: 8.2706
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g23700genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.11.8e-3271127259
  ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  + vrY+eClkNhAa++Gg+a+DGCgEfmps geegt +al+C+AC+CHRnFHR+eve 
  Cc02_g23700  71 KMVRYRECLKNHAAAMGGNATDGCGEFMPS-GEEGTLEALTCSACNCHRNFHRKEVEG 127
                  679**************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.6E-2973125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257746.0E-2673131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.6E-3174125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.66475124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-19215283IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-31218284IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-27222278IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MELPSQEGEM PIPLNSTYGG GHGHTSHGHG HMIHHDPVPS AHNHMIPSSA PQMPSNGPIS  60
SSLEEHVPFK KMVRYRECLK NHAAAMGGNA TDGCGEFMPS GEEGTLEALT CSACNCHRNF  120
HRKEVEGEPS SCDCFHSPHP NRVGRKVIVG HHHKSLLGPE SLGYPTGALI PSRAAPPHPM  180
IMSYNMGSLP SESDEQDEAG GGGGGAVGGG IVSARPPHQL VKKRFRTKFT PEQKEKMLNF  240
AEKVGWKIQK QEEAVVQQFC QEVGVKRRVL KVWMHNNKHN LAKKNHNASS NNINPHNQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-242232801875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027113325.10.0zinc-finger homeodomain protein 4
SwissprotQ9M9S02e-78ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A068TN670.0A0A068TN67_COFCA; Uncharacterized protein
STRINGVIT_12s0035g01880.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.25e-72homeobox protein 31