PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g22190
Common NameGSCOC_T00014885001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 559aa    MW: 61672 Da    PI: 5.9829
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g22190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.3e-30247306159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Cc02_g22190 247 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 306
                  58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-32232308IPR003657WRKY domain
SuperFamilySSF1182901.02E-27240308IPR003657WRKY domain
PROSITE profilePS5081129.184242308IPR003657WRKY domain
SMARTSM007743.2E-37247307IPR003657WRKY domain
PfamPF031064.6E-27248306IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MGPEETGMEI DLSLKLDAQH EERTTEDQDD HHRQEVGKFP AEGKRETEVE EEAVDQEGHT  60
TVDNSVCDET MKTEEISVLQ LEMDRMKEEN KALRKAVEQT MKDYYDLQMK FSVVQQNIQT  120
KDPRTFLSLT GNNNSPSHEA QNKGSPRFLE MNHQTPPSTA QEDDAKQRHE LGLSLTLQSS  180
STSQEKEDEY MGNIEKKEDT PKALITPMQN KLQRSSSLGG GISNHLSSPP NRKARVSVRA  240
RCEAATMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPGCP VRKQVQRCLE DMSILITTYE  300
GTHNHPLPVG ATAMASTASA AASFMLLDSS NPLSSDGIMS NFNRSAPFPY QSPQFINPSL  360
SYASNLINIH PNDPSKGIVL DLTHNVNADA RQFPIASSSS QQPSHSWMPK PLPGNYIGNN  420
ATNIVSDLFP RQLVEGGIGP KGEGNKLLAE NVSAIASDPK FRVAVAAAIS SLINKETQTT  480
TTSHPPMAPS LIPTRDGEGG GTSSNSKNWI LESLSTGVLF KHRLEDHTTT VVVENVILTN  540
LRLSFFFFSF WLFPYFAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22234310176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102790.10.0probable WRKY transcription factor 9
SwissprotQ9C9F01e-79WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A068TME50.0A0A068TME5_COFCA; Uncharacterized protein
STRINGEOX974001e-153(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-71WRKY DNA-binding protein 9