PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g22080

Common Name

GSCOC_T00014867001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 337aa MW: 35279.4 Da PI: 7.1824

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g22080	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	47	5.5e-15	255	311	4	59
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevakl 59 +++rr++kNRe+A rsR+RK+a++ eLe v +Le+eN +L k+e+++ kk ++l Cc02_g22080 255 QQKQRRMIKNRESAARSRERKQAYTVELEALVTQLEEENARLlKEEADQKKKRFKQL 311 689************************************996266788888877776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	1.4E-13	251	313	No hit	No description
SMART	SM00338	6.3E-13	252	316	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.8E-13	254	312	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.772	254	299	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.25E-10	256	304	No hit	No description
CDD	cd14707	5.25E-20	256	298	No hit	No description
PROSITE pattern	PS00036	0	259	274	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MASSKVMSST SPANPDLPRH STSTATTSST CSTSTTGLLQ HSSAVFHPPP PPHQQPQAHH 60 HLLHHSDDHS FGSMNMEEIL KNIYSDPDTL ASAVDGDGSL PAVGAGRNNN VGEVGSKTVD 120 EVWKEIVSGG GAAAGGGGGS HEPRMTLEDF LTKAGAVSEE DVRVPGVSSP APPPVPAPAV 180 GVGGGGGYGM EAIMNAAASG VQFPPVVHMQ NAPGGFGMES QLGAGAGGTG GGSGSGRGKR 240 RAPPVEDVAL DKATQQKQRR MIKNRESAAR SRERKQAYTV ELEALVTQLE EENARLLKEE 300 ADQKKKRFKQ LMENLIPVVE QQRPPRVLRR VQSMSW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	309	QKKKRFKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106368.1	1e-170	bZIP transcription factor 12-like
TrEMBL	A0A068TNH0	0.0	A0A068TNH0_COFCA; Uncharacterized protein
STRING	XP_009615514.1	4e-83	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2771	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03970.1	2e-28	G-box binding factor 4