PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g20420
Common NameGSCOC_T00014655001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 334aa    MW: 37687.7 Da    PI: 6.8455
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g20420genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-13158205355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Cc02_g20420 158 QDHIMAERKRREKLSQRFIALSALVPGL-----KKMDKASVLGDAIKYLKQLQ 205
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.942155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-10158205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-18159226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.6E-18159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.22E-13160209No hitNo description
SMARTSM003531.9E-15161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MEIYNFRSLA ELGMDHGFSN HWSMSSLDEL STISSMAAPY HDNLHMHSSQ PIFSQKHSME  60
MSPNDANRPM KQQKTSSWSS SNSDHLSNAN FHVVNSSIYS DQVATVKPKE ETMSSVTMSF  120
SPDMIVSHGS YDQNQNYVFK ASQGAKRVST NARLTQAQDH IMAERKRREK LSQRFIALSA  180
LVPGLKKMDK ASVLGDAIKY LKQLQEKVKT LEEEARENSM ERVVYVSKYT LCDDGHEDSS  240
SDENFCDEPL PEVEAKFCNK EVLIRVHCEK RKGIQEKTIA EIEKLPLSVI NNSAMTFGGS  300
TLDITVTAKM EEEFAMPIKD LVKHLRSALK KFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-14159214863Transcription factor MYC2
5gnj_B1e-14159214863Transcription factor MYC2
5gnj_E1e-14159214863Transcription factor MYC2
5gnj_F1e-14159214863Transcription factor MYC2
5gnj_G1e-14159214863Transcription factor MYC2
5gnj_I1e-14159214863Transcription factor MYC2
5gnj_M1e-14159214863Transcription factor MYC2
5gnj_N1e-14159214863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168ERKRRE
2164169RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106125.10.0transcription factor bHLH18-like
SwissprotQ9T0722e-60BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A068TPP10.0A0A068TPP1_COFCA; Uncharacterized protein
STRINGXP_009779237.11e-123(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-62bHLH family protein