PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g19720 | ||||||||
Common Name | GSCOC_T00014546001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 20575.5 Da PI: 8.1978 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 101.3 | 8.8e-32 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+a+pe +r+++++sl+yeA+ r+ +Pv+G+vg+++++++ql+q+++e Cc02_g19720 2 SCNGCRILRKGCNENCILRQSLqgigsPQAQANATVFVAKFFGRAGLMSFLSAVPEPQRPALFQSLLYEACGRTVNPVSGVVGLLWTGNWQLCQSAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l+ Cc02_g19720 100 TVLR 103 8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.692 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-26 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MSCNGCRILR KGCNENCILR QSLQGIGSPQ AQANATVFVA KFFGRAGLMS FLSAVPEPQR 60 PALFQSLLYE ACGRTVNPVS GVVGLLWTGN WQLCQSAVET VLRGGVLRPM MNLPAEPQEA 120 VDHDDASEAS RLCLNLSARV TAGGRVKRRS ATPEESETST MESCYDYTAS NYYQNLKGGE 180 GTKLLRLFF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027106083.1 | 1e-138 | LOB domain-containing protein 37-like | ||||
Swissprot | Q9SZE8 | 2e-61 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A068TPI6 | 1e-137 | A0A068TPI6_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400066165 | 1e-76 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA966 | 24 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 2e-63 | LOB domain-containing protein 39 |