PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g19450
Common NameGSCOC_T00014512001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-PHD
Protein Properties Length: 882aa    MW: 97455.4 Da    PI: 4.5927
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g19450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox345e-117117551256
                  HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  +++L e F++n+yp+   +e LAk+lgL  +qV+ WF N R   +
  Cc02_g19450 711 VQRLLESFRENQYPKNGVKESLAKELGLRIQQVSKWFENARWSCR 755
                  68899************************************8776 PP
2PHD38.13.5e-13339394151
                  SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
          PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                  +C+ Cg+   + +++++lCdg C++ fH+ Cl+++l +e++p +   wlC+ C++k
  Cc02_g19450 339 FCAKCGSkdLTLDNDIILCDGaCERGFHQFCLEPPLLKEDIPPDeeGWLCPGCDCK 394
                  699***965555********66******************999899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579038.86E-14329397IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.2E-13335394IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.047337394IPR019787Zinc finger, PHD-finger
PfamPF006281.2E-10339394IPR019787Zinc finger, PHD-finger
CDDcd155041.58E-26339391No hitNo description
SMARTSM002493.8E-9339392IPR001965Zinc finger, PHD-type
PROSITE patternPS013590340391IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.609.0E-13690751IPR009057Homeodomain-like
SuperFamilySSF466894.28E-11694760IPR009057Homeodomain-like
PROSITE profilePS5007112.779697757IPR001356Homeobox domain
SMARTSM003891.4E-9699761IPR001356Homeobox domain
CDDcd000862.01E-9701758No hitNo description
PfamPF000461.4E-8711755IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 882 aa     Download sequence    Send to blast
MDVVRESSLS ESHLSPEQRA LELGNGFVSG NRCTESVIQK CEMVKDAHIG PEETGIRKSN  60
ANSVEILKTV DGLTNNSDFE SFRLHNIQYL PESANAEPLE QKQVVGDDNV DNRLTETEIA  120
APDLTGLEEY IQISVSPCEN VAVVPAFASP GSEPQDASMH VDPQQTESTQ KGAVNAGGES  180
VLDKRTPFES RKRKSTSTIP VTARVLRSRS QEKSKESEKK DVVEDAATEA YRRKRGKKKQ  240
RRNIPVNEFS RIRAHLRYLL HRIKYEQNLI DAYSGEGWKG QSLEKIKPEK ELQRAKSQIF  300
RYKLKIRDLF RQIDLLLAEG KLPESLFDSD GQIDSEDIFC AKCGSKDLTL DNDIILCDGA  360
CERGFHQFCL EPPLLKEDIP PDEEGWLCPG CDCKVDCIEL LSDFQGSNLS VLDKWEKVFP  420
EEAAAAASGM KMDDYSGLPS DDSDDDDYDP DKPEVDNMVL GEESSSDESD YFSASEEPVS  480
AVKAEQILGL PSDDSEDDDF DPSAADHGEL AKQESSSSDF SSDSEDFGAM FHEKEPLGEE  540
AGHVSSVSTQ SNLAVGSIGP IFKVGRDKRH SLSDELSFLL ESNDAPVSGK RHVERLDYKK  600
LHEETYGDTS SDSSDEDYGE TVGPRRRKKS TGKAILVPSN EPETIHKGAD IKDENCNQKD  660
FEMTPVEKIN KKFEIEGSNN MSVDSPRIST EGGSSGKRTG RPYQRLGDGI VQRLLESFRE  720
NQYPKNGVKE SLAKELGLRI QQVSKWFENA RWSCRHSSRM DSKMTGTTSI NGTCLPEINE  780
KVPKHGEQSN LESATCNEEG KMALPQTNPC VEGQHIAGTG EGNSAIDFSP DSINGRCTQV  840
DEQKPDQLSS AEETSKQVSN VNASKSQSVR RSGRLQARSG N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189194SRKRKS
2231239RRKRGKKKQ
3233241KRGKKKQRR
4234240RGKKKQR
5623627PRRRK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106044.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487861e-147PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A068TM200.0A0A068TM20_COFCA; Uncharacterized protein
STRINGXP_009775281.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.14e-91Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain