PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g18460
Common NameGSCOC_T00014390001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 420aa    MW: 46534.4 Da    PI: 6.9185
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g18460genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.13.6e-32273328156
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                  k+r++W+peLH+rFv+a+++LGG + AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  Cc02_g18460 273 KQRRCWSPELHRRFVDALQKLGGCQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 328
                  79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.07E-18270331IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-30270331IPR009057Homeodomain-like
PROSITE profilePS5129414.497270330IPR017930Myb domain
TIGRFAMsTIGR015579.0E-27273328IPR006447Myb domain, plants
PfamPF002492.5E-8275326IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MGSIPPELSL DFRPPSTRTS CCYVPKTIDE LVGQVSMIGN VAEKLLKLDD YVTKLEDEMK  60
KIDAFKRELP LCMLLLNDAI RTLKEESTKY TTMDAGPVLE EFIPLKKNCD EDEKSEMVVE  120
TSKKDKDSRE KMSWMSSVQL WNSDNPASKS DFDINEAHSK PETKKRVVEA EIQEDLFESC  180
KNGSVARAFV PFQGCSSLPV MITRKENEYE LPGVVPGLSL QTPGTKKLKE DIGSGGLNSR  240
VGGSRAVSCS VSSVQSNVRA AVSQQQQQQT SRKQRRCWSP ELHRRFVDAL QKLGGCQAAT  300
PKQIRELMQV DGLTNDEVKS HLQKYRLHTR RLPTTTGTST NQPVVVLGAL WLPQDQQHGE  360
SSKQSNSHSG SPQGPLQLGG ASRGTSMTGG DSMEDEEDDK SESHSCWKSH IRTSQRTNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-13273326255Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-13273326255Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-13273326154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-13273326154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-13273326154Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-13273326154Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-13273326255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-13273326255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-13273326255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-13273326255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-13273326255Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-13273326255Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105893.10.0transcription factor HHO2-like
TrEMBLA0A068TME10.0A0A068TME1_COFCA; Uncharacterized protein
STRINGVIT_03s0063g01060.t011e-152(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43612443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.16e-43G2-like family protein