PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g17190
Common NameGSCOC_T00014227001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 669aa    MW: 73317.6 Da    PI: 5.8662
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g17190genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-094344711954
                  HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
     Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                  Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Cc02_g17190 434 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 471
                  664459******************************88 PP
2BELL1184.6e-38296367172
         BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e+q+lq+k +kLl +++eVdkrYkqy++q+q+v+ssF+++ag ++a+pYt+lAl++iSrhFrcL+dai  q+
  Cc02_g17190 296 EKQDLQSKMSKLLAMMDEVDKRYKQYYHQMQIVVSSFDVIAGSEAARPYTALALQTISRHFRCLRDAINVQV 367
                  6899****************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.8E-56216365IPR006563POX domain
PfamPF075261.8E-48222363IPR006563POX domain
PROSITE profilePS5007112.163412475IPR001356Homeobox domain
CDDcd000861.47E-12415476No hitNo description
SMARTSM003891.8E-9415479IPR001356Homeobox domain
SuperFamilySSF466894.28E-17416482IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-28418481IPR009057Homeodomain-like
PfamPF059204.5E-18432471IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MAAYFPGSDN ERDMSTMLHL RESLSSSYSN APVLPGNLMM YMNYSSSSGS YSGALAGNSQ  60
NHGSSITDLL VASSSKASEH ENLVDLGGQR IGEHDLTEWK NSRNSMLLMY PGGDAAGVLQ  120
NPQNMQIQGL SLTLSTHVPS GFQVSSLQCS SPNPGYSSLL SANPSIPAVG TGRNGYFENL  180
DSSQSKQSRH IEYVSSGFPG SNSDTARADV SPYGMPSIAR AVPNSKYLKA AQQLLDEVVN  240
VRKALKEHNP KKGAMKDSKE SHGDPKNGES DYPICGSSTN VQESSSNSAS ELSAAEKQDL  300
QSKMSKLLAM MDEVDKRYKQ YYHQMQIVVS SFDVIAGSEA ARPYTALALQ TISRHFRCLR  360
DAINVQVQVT RRSLGEQDAS TSSKAIGISR LRYVDQQIKQ QRALQQLGMM QQHAWRPQRG  420
LPESSVTVLR AWLFEHFLHP YPKDSDKIML ARQTGLTRSQ VSNWFINARV RLWKPMVEEM  480
YKEEAVDAEM DSNSSSDIAG KTVVGDVKES EGRGEDILQS TTSTVTERCS AEQLIESKSD  540
YFPDVEMMET NIGRPFQNDS NVLPDTAVVQ SIEGNGRYMV ASAYHMSELE RFENGSGVSL  600
TLGLQHSDGG TVRMPIQTYQ NYIPMRGDDK CSVAAPSMGV QAADFDCMDS GNQQNRFASS  660
QTLHDFVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16421478158Homeobox protein Meis1
4xrs_B2e-16421478158Homeobox protein Meis1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112197.10.0BEL1-like homeodomain protein 7
RefseqXP_027112198.10.0BEL1-like homeodomain protein 7
TrEMBLA0A068TL140.0A0A068TL14_COFCA; Uncharacterized protein
STRINGEOX979220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA102052226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-125BEL1-like homeodomain 6