PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g17130
Common NameGSCOC_T00014219001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 313aa    MW: 36482.8 Da    PI: 7.7465
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g17130genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.56.3e-31121042103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ed e++++isw+++g+s++vld+ +fa +vLpkyFkhsnf+SF+ QLn YgF+k+  ++          e+++k+F++g+++ll +i+
   Cc02_g17130  12 FLMKTFQMVEDTETNNMISWNSEGTSLIVLDHLKFAAEVLPKYFKHSNFSSFIYQLNNYGFRKIGLRQ---------YEYENKWFQRGQEHLLMNIR 99 
                   9***************************************************************9988.........78****************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++ e
   Cc02_g17130 100 RRNDE 104
                   *9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.05E-288101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-418101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.2E-329101IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.7E-2712101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-171235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-175062IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.7E-176375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MKGVRGFTPP PFLMKTFQMV EDTETNNMIS WNSEGTSLIV LDHLKFAAEV LPKYFKHSNF  60
SSFIYQLNNY GFRKIGLRQY EYENKWFQRG QEHLLMNIRR RNDEDPTIRK RRGPREQYIT  120
ATRPSMEAEL KIFEDHMNAL KEDITRSKYH MGKLESSIAT FKKNVKIMEA KSKVLIKVLA  180
KIFSPALVEK IIQRVEEEPE LEILQTMKRR RVILPQSSKT ITKSTDDRAC GMDQDDQEAN  240
TSMAESKKIA DQKLWKKFMG DDSVSEDESE QQLLKQHSRI DMGFDDLMVS KIVNAKEPNL  300
DVEDEVVVDL WT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B4e-24101013105Heat shock factor protein 2
5d8l_B4e-24101013105Heat shock factor protein 2
5d8l_D4e-24101013105Heat shock factor protein 2
5d8l_F4e-24101013105Heat shock factor protein 2
5d8l_H4e-24101013105Heat shock factor protein 2
5hdk_A5e-24101018110Heat shock factor protein 2
5hdk_B5e-24101018110Heat shock factor protein 2
5hdk_C5e-24101018110Heat shock factor protein 2
5hdk_D5e-24101018110Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1207211KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027157049.10.0heat stress transcription factor A-7b-like
TrEMBLA0A068TM420.0A0A068TM42_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.17e-39heat shock transcription factor A2