PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g16840
Common NameGSCOC_T00014183001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family BBR-BPC
Protein Properties Length: 313aa    MW: 34911.1 Da    PI: 10.1221
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g16840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind330.54.8e-10113121301
    GAGA_bind   1 mdddgsre..rnkg.yye...............paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnk 80 
                  mdd g+re  r+++ yy+               +++++   +++++  ++aerda+i+er+ alsek+aa+ erd a +qrd+a++er++al erdn+
  Cc02_g16840   1 MDDGGQREsrRQRTdYYKgahspwngiphyqikEQNAFF--MNTKINMLLAERDAAIEERDRALSEKRAALDERDSAIQQRDTAISERDHALRERDNA 96 
                  99****999888889************777653224444..8889999999*********************************************** PP

    GAGA_bind  81 llalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakk.pkekkakkkkkksekskkk 177
                  ++al+++e +++ al  g+++ +g k  ++++   + + ++sa ++re +++ea+pi+   +ea ++++ k+++ +++ p ++k+ kk k +e+ +++
  Cc02_g16840  97 IAALQFQESTMNGAL--GCGTQHGMKRFNQHRS-PHANSAQSANKTREGHITEAFPITAISSEAARSHQAKRTKVNNViPTKSKSAKKAKVGEDLNRH 191
                  ******999876555..8899999999997776.78889999999*************9999999888888665544326666666777777777777 PP

    GAGA_bind 178 vkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaa 274
                  v++++    skae++ +dl +ln++s+De+++P+PvC+CtG+ rqCYkWGnGGWqS+CCtt++SvyPLP+ +++r+aR++grKmS+++f++lL +Laa
  Cc02_g16840 192 VTTDG----SKAEWDAQDLsSLNQISFDETRMPIPVCTCTGVARQCYKWGNGGWQSSCCTTSLSVYPLPQIPNKRHARMGGRKMSGSVFSRLLTRLAA 285
                  77766....89********89***************************************************************************** PP

    GAGA_bind 275 eGydlsnpvDLkdhWAkHGtnkfvtir 301
                   G+dls ++DLk++WAkHGtn+++ti+
  Cc02_g16840 286 GGHDLSIALDLKNYWAKHGTNRYITIK 312
                  **************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062171.1E-901312IPR010409GAGA-binding transcriptional activator
SMARTSM012263.6E-1291312IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDDGGQRESR RQRTDYYKGA HSPWNGIPHY QIKEQNAFFM NTKINMLLAE RDAAIEERDR  60
ALSEKRAALD ERDSAIQQRD TAISERDHAL RERDNAIAAL QFQESTMNGA LGCGTQHGMK  120
RFNQHRSPHA NSAQSANKTR EGHITEAFPI TAISSEAARS HQAKRTKVNN VIPTKSKSAK  180
KAKVGEDLNR HVTTDGSKAE WDAQDLSSLN QISFDETRMP IPVCTCTGVA RQCYKWGNGG  240
WQSSCCTTSL SVYPLPQIPN KRHARMGGRK MSGSVFSRLL TRLAAGGHDL SIALDLKNYW  300
AKHGTNRYIT IK*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027160005.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_027160006.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_027160008.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_027160009.10.0protein BASIC PENTACYSTEINE4-like
RefseqXP_027160010.10.0protein BASIC PENTACYSTEINE4-like
SwissprotQ8S8C61e-118BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBLA0A068TKY00.0A0A068TKY0_COFCA; Uncharacterized protein
STRINGXP_009804621.11e-163(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92872128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21240.21e-120basic pentacysteine 4