PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g16830
Common NameGSCOC_T00014181001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 590aa    MW: 64155.8 Da    PI: 7.1428
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g16830genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.12.8e-11436494563
                  CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  kr++r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l  l+  +a l+s++
  Cc02_g16830 436 KRAKRILANRQSAARSKERKMRYIAELEHKVQTLQTEATTLSAQLTLLQRDSAGLTSQN 494
                  9****************************************************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.8E-18432496IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.852434497IPR004827Basic-leucine zipper domain
PfamPF001706.2E-10436494IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.7E-11436493No hitNo description
SuperFamilySSF579596.05E-11436487No hitNo description
CDDcd147033.21E-23437488No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MGGDSDEASS AMMQRLQSSF GTSSSSVPIQ QQQQQQLLMS VNQIEVPQLN SSQFRGQMRQ  60
FSPSFSVDGS KRAGIPPSHP QMPRVSPYSQ IPVTRPVNQQ SGIQIFGNTS GPGPSHARSL  120
SQPSFFSLDS LPPLSPSPCK ESSPSSISEH HLSVDVSMED QNANSQSSLL PPSPFTRGAN  180
SLRVGENLPP RKTHRRSNSD IPFGFSTIMQ SSPPLVPLRS PGAAIPPREN SVAKPAQLVK  240
RESFWERSSE ANAEGMGERK SEGEVVDDLF SAYMNLDNID ALNSSGTDEK QGTENREDLD  300
SRASGTRTNG GDSSDNEATS SVNESSNSMQ RLGISSSSEK REGFKRNAGG DIAPASRHYR  360
SVSMDSFMGK LNFGDESPKM PPSPGARAGQ LSPSNSLDAN SNTFSLEFGN GEFSGAELKK  420
IMANEKLAEI ALSDPKRAKR ILANRQSAAR SKERKMRYIA ELEHKVQTLQ TEATTLSAQL  480
TLLQRDSAGL TSQNNELKFR LQAMEQQAQL RDALNEALTA EVQRLKLATA ELNGDPSKYQ  540
QQLAMSSQMF QLHHQQAAQL NIHQLQQQQS QSPQQQQSGS TPAKHETNQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027112119.10.0myb-like protein Z
RefseqXP_027112120.10.0myb-like protein Z
TrEMBLA0A068TM070.0A0A068TM07_COFCA; Uncharacterized protein
STRINGXP_009804619.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-154bZIP family protein