PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g15530

Common Name

GSCOC_T00014005001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 391aa MW: 43951.7 Da PI: 7.5876

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g15530	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++l d++k +G g W++ +r+ g++R++k+c++rw +yl Cc02_g15530 14 RGAWTPLEDKILTDYIKSHGVGKWASLPRRAGLKRCGKSCRLRWVNYL 61 89********************************************97 PP
2	Myb_DNA-binding	38.1	3.5e-12	67	161	1	46
TSSS-HHHHHHHHHHHHHTTTT..................................................-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..................................................tWktIartmgkgRtlkqcksrw 44 rg+ T +E++l+++++k+lG++ W++Ia +++ gRt++++k++w Cc02_g15530 67 RGNITDDEEDLIIRLHKLLGNRpatllgrrnlpvflpripvhvnfqtyhkkkkkklftllicivwdfkesvqEWSLIAGRLP-GRTDNEIKNYW 159 7999****************************************************************************.********* PP HH CS Myb_DNA-binding 45 qk 46 ++ Cc02_g15530 160 NT 161 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.665	9	65	IPR017930	Myb domain
SMART	SM00717	4.3E-12	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	2.1E-13	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.9E-22	15	68	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.38E-19	15	88	IPR009057	Homeodomain-like
CDD	cd00167	1.38E-9	16	61	No hit	No description
SMART	SM00717	1.0E-8	66	165	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-17	69	85	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.57E-7	92	163	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.348	115	167	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-17	136	167	IPR009057	Homeodomain-like
Pfam	PF00249	1.0E-5	139	161	IPR001005	SANT/Myb domain
CDD	cd00167	4.03E-5	140	161	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MGRRPCCAKE GLNRGAWTPL EDKILTDYIK SHGVGKWASL PRRAGLKRCG KSCRLRWVNY 60 LRSDIKRGNI TDDEEDLIIR LHKLLGNRPA TLLGRRNLPV FLPRIPVHVN FQTYHKKKKK 120 KLFTLLICIV WDFKESVQEW SLIAGRLPGR TDNEIKNYWN TKIVKKIQGR QHLPACSSAP 180 LTKPSSSRSR SPPLLQNLTR TDQPPNSEKL ELESCTHVIR TKARRLTKVF IDEDLQTSAG 240 TQQPGIIAPA EAQAPPSSAD AKENFNKTPT DHNNTVGAEQ PLGAVMESPS TFSGEEGYSS 300 SSGFMMDFEM DDKYLFDFLS TDVVQFTHDF FEGVVQGTNI ETNHEVETND FPPNSCPTAL 360 SHDDDDDHNL ADLGSITTFL HPALAWFHED *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MGRRPCCAKE GLNRGAWTPL EDKILTDYIK SHGVGKWASL PRRAGLKRCG KSCRLRWVNY  60
LRSDIKRGNI TDDEEDLIIR LHKLLGNRPA TLLGRRNLPV FLPRIPVHVN FQTYHKKKKK  120
KLFTLLICIV WDFKESVQEW SLIAGRLPGR TDNEIKNYWN TKIVKKIQGR QHLPACSSAP  180
LTKPSSSRSR SPPLLQNLTR TDQPPNSEKL ELESCTHVIR TKARRLTKVF IDEDLQTSAG  240
TQQPGIIAPA EAQAPPSSAD AKENFNKTPT DHNNTVGAEQ PLGAVMESPS TFSGEEGYSS  300
SSGFMMDFEM DDKYLFDFLS TDVVQFTHDF FEGVVQGTNI ETNHEVETND FPPNSCPTAL  360
SHDDDDDHNL ADLGSITTFL HPALAWFHED *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105580.1	0.0	transcription factor MYB8-like
Refseq	XP_027163952.1	0.0	transcription factor MYB8-like
TrEMBL	A0A068TLN9	0.0	A0A068TLN9_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47460.1	8e-48	myb domain protein 12