PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g14250
Common NameGSCOC_T00013832001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 277aa    MW: 30598 Da    PI: 4.6267
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g14250genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-19127177255
          AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g ++AeIrd  +   k  r +lg+fgtaeeAa a+++a++k++g
  Cc02_g14250 127 HYRGVRRRP-WGTYAAEIRDsSR---KGGRLWLGTFGTAEEAAMAYDKAALKIRG 177
                  7********.**********332...249************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.8E-30126186IPR001471AP2/ERF domain
CDDcd000183.11E-28127185No hitNo description
PROSITE profilePS5103223.024127185IPR001471AP2/ERF domain
PfamPF008472.8E-13127177IPR001471AP2/ERF domain
SMARTSM003807.8E-35127191IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-22127187IPR016177DNA-binding domain
PRINTSPR003672.1E-12128139IPR001471AP2/ERF domain
PRINTSPR003672.1E-12167187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MPYQVNRIFA SSGMAQDEKS TILENVWANY IAKSELENAH QNPVESSQTW DDLPGLNSRD  60
GSLLERLPSL GTFISMGAEA WEQPLDGANL PNNTESSRTV DSQETCSSKK MDSGADEMKV  120
KKVVTRHYRG VRRRPWGTYA AEIRDSSRKG GRLWLGTFGT AEEAAMAYDK AALKIRGPKA  180
YLNFPLETVA EAMGTSTSCQ TNDTATSASV TCGEIMSNSR KRVLREWDEN EDSFINNAQS  240
AKISAANWEE AAMSDINLLQ FPNLESEYLE NLFSLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-25126186161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101443.10.0ethylene-responsive transcription factor ERF091-like
TrEMBLA0A068TKN40.0A0A068TKN4_COFCA; Uncharacterized protein
STRINGEOY281131e-77(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112371823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.11e-31ERF family protein