PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g13850
Common NameGSCOC_T00029088001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HB-other
Protein Properties Length: 1511aa    MW: 169706 Da    PI: 6.3451
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g13850genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox512.5e-16352857
                 -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 t+ qle+Le+ +e++ yps+++r+ L +klgLt+rq ++WF+ rR k+kk
  Cc02_g13850  3 TPFQLEVLEKTYENETYPSEATRAVLMEKLGLTDRQLQMWFCHRRLKDKK 52
                 889*********************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.4E-10157IPR001356Homeobox domain
PROSITE profilePS5007115.111153IPR001356Homeobox domain
CDDcd000861.31E-12253No hitNo description
SuperFamilySSF466899.84E-14253IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-16352IPR009057Homeodomain-like
PfamPF000465.7E-14352IPR001356Homeobox domain
SMARTSM005712.7E-23472531IPR018501DDT domain
PROSITE profilePS5082716.732472531IPR018501DDT domain
PfamPF027911.0E-18474528IPR018501DDT domain
PfamPF050661.0E-12653720IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.5E-9832875IPR028942WHIM1 domain
PfamPF156131.5E-1210071079IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1511 aa     Download sequence    Send to blast
MKTPFQLEVL EKTYENETYP SEATRAVLME KLGLTDRQLQ MWFCHRRLKD KKEAAGMAAM  60
KPRSAAGSVG KRGLMDSPRD EMMIAEPGSE HLSSSGSGSS EFDNGDEMPM VPIRYFESPR  120
TVLERRVIAC VEAQLGEPLR EDGPILGVEF DELPPGAFGA PIVTAEHRER YRHSYDNKPY  180
GSYDTKQIKA VPSSHQESAE PKIRSDAYGQ VAPPYLYDSP VAGPAGKTLP LMQGNGHLSR  240
DYGLEGQASS ASILSQQGRQ GHLPSPPTHD AFISNNEDVM QMERKRKGDE ARIEREVQAQ  300
EKRIRKELEK QDLLRRKREE QMKKEMEKQD RERKKEELRM MREQQRKEER CQREEKREME  360
RREKFMQKEL LRAERKKQKE ELRREKEAAR QKAAMERAAA RRIAKESLEL IEDERLELME  420
LAASSKGLSS IVSLDYDTLQ GLESFRESLC KFPPESVKLK KPFAVRPWID SEDNVGKLLM  480
VWRFCITFAD VLGLWPFTLD EFIQALHDYD SRLLGEIHIA LLRMIIKDIE DVVRTPSGGP  540
GTNQYSAVNP EGGHPHIVEG AYVWGFDIRT WQKHLNPLTW PEILRQFALS AGFGPQLKKK  600
STERGGLNDS ETKGCEDIVS ALRNGSAAEN AVAIMQEKGF SLQRKSRHRL TPGTVKFAAY  660
HVLALEGSKG LNVLELADKI QKSGLRDLTT SKTPEASISV ALSRDPILFE RIAPSTYNVR  720
PAYRKDPADA EAIISAAREK IQRFVNGVLT GQNAEDEERD DDSDCDVAEG PEVDDLGTPS  780
EANKIGEGCN EAGTCSGNGK DNLSDDIAVE NEFGSDGASN SDQAAEIDES RSGEPWVQGL  840
TEGEYSELSV EERLNALVIL VGIANEGNSI RVILEDRLDA ANAIKKQMWT EAQLDKRRMK  900
EEIITKFSES NYGATAMEGS QSPLGLVDNR NGEASLDLME KDEPAGGLDN AHNHVDTLAI  960
EKSSFTNDAS FAQISNSIQQ NNFTAERSRM QMKAFIGHIA EEMYVYRSLP LGSDRRRNRY  1020
WLFVASPSSH DPGSGRIFVE SPDGFWRLLD SEEAFDALST SLDMRGIRES HLHIMLQKIE  1080
VPFRERVRKN LSFNCIEGKE GMKTGDELAE VSSSPGCNSG LDSPSSTVCG MNSDSLEPSS  1140
SFKIELGRNE TERENALKRY EDFQIWMWRE CFNSSVLRSL TYGKNRCTPL LGTCHLCFDS  1200
YMNVECHGHS CHTTSKVGNK EGLVEQTIHE EKVKVEPLNF GGSNSSHPLR IRLIKVLLNS  1260
LEASVPHNAL QSSWTGDLRK IWAAKLLNAS RTDDLLQILT QFEGAIKRDY LSSSFETTEE  1320
LLCYCASSKV SGYDFAHRGS VSQLPWIPQT TSAVALRLLE LDTSILHGQH EKPKLPDEKK  1380
VENLIKVPSK YSNTGDTQKV PTTDSKRDKQ QLKEETWDYT GNASGSSDYK QVIRGRGSGR  1440
PRGRWPKGFA GSVSESGRRS LKHGGTLTEA LMQQGERSYG HKHGRGRRTV RKRRTEKKFS  1500
EETWCRESCK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14552RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105382.10.0homeobox-DDT domain protein RLT1 isoform X2
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A068TTV70.0A0A068TTV7_COFCA; Uncharacterized protein
STRINGXP_009781785.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21422352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1