PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g13850 | ||||||||
Common Name | GSCOC_T00029088001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | HB-other | ||||||||
Protein Properties | Length: 1511aa MW: 169706 Da PI: 6.3451 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51 | 2.5e-16 | 3 | 52 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ qle+Le+ +e++ yps+++r+ L +klgLt+rq ++WF+ rR k+kk Cc02_g13850 3 TPFQLEVLEKTYENETYPSEATRAVLMEKLGLTDRQLQMWFCHRRLKDKK 52 889*********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 1.4E-10 | 1 | 57 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 15.111 | 1 | 53 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.31E-12 | 2 | 53 | No hit | No description |
SuperFamily | SSF46689 | 9.84E-14 | 2 | 53 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.1E-16 | 3 | 52 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 5.7E-14 | 3 | 52 | IPR001356 | Homeobox domain |
SMART | SM00571 | 2.7E-23 | 472 | 531 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.732 | 472 | 531 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.0E-18 | 474 | 528 | IPR018501 | DDT domain |
Pfam | PF05066 | 1.0E-12 | 653 | 720 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 2.5E-9 | 832 | 875 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 1.5E-12 | 1007 | 1079 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1511 aa Download sequence Send to blast |
MKTPFQLEVL EKTYENETYP SEATRAVLME KLGLTDRQLQ MWFCHRRLKD KKEAAGMAAM 60 KPRSAAGSVG KRGLMDSPRD EMMIAEPGSE HLSSSGSGSS EFDNGDEMPM VPIRYFESPR 120 TVLERRVIAC VEAQLGEPLR EDGPILGVEF DELPPGAFGA PIVTAEHRER YRHSYDNKPY 180 GSYDTKQIKA VPSSHQESAE PKIRSDAYGQ VAPPYLYDSP VAGPAGKTLP LMQGNGHLSR 240 DYGLEGQASS ASILSQQGRQ GHLPSPPTHD AFISNNEDVM QMERKRKGDE ARIEREVQAQ 300 EKRIRKELEK QDLLRRKREE QMKKEMEKQD RERKKEELRM MREQQRKEER CQREEKREME 360 RREKFMQKEL LRAERKKQKE ELRREKEAAR QKAAMERAAA RRIAKESLEL IEDERLELME 420 LAASSKGLSS IVSLDYDTLQ GLESFRESLC KFPPESVKLK KPFAVRPWID SEDNVGKLLM 480 VWRFCITFAD VLGLWPFTLD EFIQALHDYD SRLLGEIHIA LLRMIIKDIE DVVRTPSGGP 540 GTNQYSAVNP EGGHPHIVEG AYVWGFDIRT WQKHLNPLTW PEILRQFALS AGFGPQLKKK 600 STERGGLNDS ETKGCEDIVS ALRNGSAAEN AVAIMQEKGF SLQRKSRHRL TPGTVKFAAY 660 HVLALEGSKG LNVLELADKI QKSGLRDLTT SKTPEASISV ALSRDPILFE RIAPSTYNVR 720 PAYRKDPADA EAIISAAREK IQRFVNGVLT GQNAEDEERD DDSDCDVAEG PEVDDLGTPS 780 EANKIGEGCN EAGTCSGNGK DNLSDDIAVE NEFGSDGASN SDQAAEIDES RSGEPWVQGL 840 TEGEYSELSV EERLNALVIL VGIANEGNSI RVILEDRLDA ANAIKKQMWT EAQLDKRRMK 900 EEIITKFSES NYGATAMEGS QSPLGLVDNR NGEASLDLME KDEPAGGLDN AHNHVDTLAI 960 EKSSFTNDAS FAQISNSIQQ NNFTAERSRM QMKAFIGHIA EEMYVYRSLP LGSDRRRNRY 1020 WLFVASPSSH DPGSGRIFVE SPDGFWRLLD SEEAFDALST SLDMRGIRES HLHIMLQKIE 1080 VPFRERVRKN LSFNCIEGKE GMKTGDELAE VSSSPGCNSG LDSPSSTVCG MNSDSLEPSS 1140 SFKIELGRNE TERENALKRY EDFQIWMWRE CFNSSVLRSL TYGKNRCTPL LGTCHLCFDS 1200 YMNVECHGHS CHTTSKVGNK EGLVEQTIHE EKVKVEPLNF GGSNSSHPLR IRLIKVLLNS 1260 LEASVPHNAL QSSWTGDLRK IWAAKLLNAS RTDDLLQILT QFEGAIKRDY LSSSFETTEE 1320 LLCYCASSKV SGYDFAHRGS VSQLPWIPQT TSAVALRLLE LDTSILHGQH EKPKLPDEKK 1380 VENLIKVPSK YSNTGDTQKV PTTDSKRDKQ QLKEETWDYT GNASGSSDYK QVIRGRGSGR 1440 PRGRWPKGFA GSVSESGRRS LKHGGTLTEA LMQQGERSYG HKHGRGRRTV RKRRTEKKFS 1500 EETWCRESCK * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 52 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027105382.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X2 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | A0A068TTV7 | 0.0 | A0A068TTV7_COFCA; Uncharacterized protein | ||||
STRING | XP_009781785.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 0.0 | homeobox-1 |