PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g13600

Common Name

GSCOC_T00029126001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 138aa MW: 15449.1 Da PI: 8.3872

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g13600	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136	1.2e-42	55	130	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cqv++C+ad+++ k yhrrhkvCe+hskap vlv+g++qrfCqqCsrfh+lsefDe+krsCrrrLa+hnerrrk++ Cc02_g13600 55 CQVDDCSADMKDSKPYHRRHKVCEHHSKAPIVLVAGVRQRFCQQCSRFHDLSEFDEAKRSCRRRLAGHNERRRKSS 130 **************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF037575	1.8E-57	1	137	IPR017238	Squamosa promoter-binding protein
Gene3D	G3DSA:4.10.1100.10	2.2E-35	52	116	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.522	52	129	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.18E-39	53	133	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-33	55	128	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0010229	Biological Process	inflorescence development
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MEASKAEGKR SMKQVAAEED GDDDEDVGEE SKKRRALTLS GEKATGISGP IQPSCQVDDC 60 SADMKDSKPY HRRHKVCEHH SKAPIVLVAG VRQRFCQQCS RFHDLSEFDE AKRSCRRRLA 120 GHNERRRKSS YDSRGEG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-38	55	128	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00290	DAP	Transfer from AT2G33810	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027105313.1	5e-96	squamosa promoter-binding protein 1
Swissprot	Q38741	3e-61	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A068TTY6	1e-94	A0A068TTY6_COFCA; Squamosa promoter-binding-like protein
STRING	Solyc02g077920.2.1	8e-59	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA749	24	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33810.1	2e-43	squamosa promoter binding protein-like 3

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]