PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g11950
Common NameGSCOC_T00029353001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 469aa    MW: 50933.1 Da    PI: 5.2627
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g11950genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.21.9e-053603971254
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  R +++ +++  L++l+ +      +K + a++L +A++YIk L
  Cc02_g11950 360 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIDYIKFL 397
                  677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.074348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-11358411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.58E-6358401No hitNo description
Gene3DG3DSA:4.10.280.101.6E-8362404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MADEFQGEVC GGSWWNSSRS MFGSSPCSSG ILHDLGSFGW STDFLDSKAR SSDDQSGNSA  60
NSDGSIVIQD LQKPNQPESA SNNSNLSIDS TLQILGIGLS SPSTTDWDRT LMHGSSNGRS  120
DQSNYQPMLQ EDHNSSMNYR QERGLDSCPA DQIQKDWSST LKNNFSTIVE EDSSINSFKS  180
SGNQPLNSIT TTSQCTAATC AGVSTSFPIS SASYGYSSTL LQTLFDTEVP QPQQSLYGTR  240
PMNYPSTTSY QNEFSPSLPK FSPLPKLQNT NSLQLSTNPN FCNGSAAAFN DLRVNFFPSV  300
QSQFPSSTFN EKPSLPSITT KVSNDGIRGL GSVAKKSSSE PAFKRPRIET PSPLPTFKVR  360
KEKLGDRITA LQQLVSPFGK TDTASVLHEA IDYIKFLHDQ VNVLSTPYLK NGSPIQRQQA  420
SDKVKDQEGS KEDLKSRGLC LVPISSTFPV AAETTTDFWT PTFGGTFR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027105081.10.0transcription factor bHLH112-like
TrEMBLA0A068TUL30.0A0A068TUL3_COFCA; Uncharacterized protein
STRINGVIT_00s0274g00070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.34e-55bHLH family protein