PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g11750 | ||||||||
Common Name | GSCOC_T00029375001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 27686.2 Da PI: 5.7774 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.1 | 8.7e-05 | 81 | 135 | 6 | 54 |
HHHHHHHHHHHHHHH.HHHHCTSCC.C.......TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsaf.eeLrellPk.as....kapskKlsKaeiLekAveYIksL 54 rE+ RRd++N++ L l + +s ++ +K++K++iL A++ + +L Cc02_g11750 81 AYREKMRRDKLNDRQtLSLSLYLFQeLSflldPERPPKVDKSAILGDATRMLIQL 135 579**********84445555555533355555599*************998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.41E-8 | 75 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-8 | 80 | 157 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.81E-5 | 83 | 140 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MASPEEDSNW VFDFGLIEDI PVPGGDLPPL DPGFQNWSNN SFYNPNSVEL DGAFQSSQSR 60 KEASSRKRAR SGPCSATDSK AYREKMRRDK LNDRQTLSLS LYLFQELSFL LDPERPPKVD 120 KSAILGDATR MLIQLRDEAE KLKESYERLQ EKVNELKAEK NELRDEKQKQ KAEKDKLEHQ 180 LKALSSQTGF LSNPSAILAP FVAPHQVFSS KMTPFVGYPG TSMWHFMPPA AVDTSEDHVL 240 RPPVA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Plays a role in resistance to amide-linked indole-3-acetic acid (IAA) conjugates such as IAA-Leu and IAA-Phe. May regulate gene expression in response to metal homeostasis changes. {ECO:0000269|PubMed:17028341}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027111604.1 | 1e-171 | transcription factor bHLH115-like | ||||
Refseq | XP_027154883.1 | 1e-171 | transcription factor bHLH115-like | ||||
Refseq | XP_027163287.1 | 1e-171 | transcription factor bHLH115-like | ||||
Swissprot | Q9C682 | 6e-67 | BH115_ARATH; Transcription factor bHLH115 | ||||
Swissprot | Q9FH37 | 8e-67 | ILR3_ARATH; Transcription factor ILR3 | ||||
TrEMBL | A0A068TUM6 | 1e-180 | A0A068TUM6_COFCA; Uncharacterized protein | ||||
STRING | XP_008224874.1 | 1e-105 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA950 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 1e-53 | bHLH family protein |