PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g11300 | ||||||||
Common Name | GSCOC_T00029428001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 669aa MW: 73464.1 Da PI: 6.4026 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.1 | 1.7e-23 | 120 | 221 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF + +++ Cc02_g11300 120 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TILAKDVHGEIWKFRHIYRGTPRRHLLTTGWSNFVNQKKLVAGDSIVFL--RAENGD 213 89****************************986445444..8999*********************************************..448899 PP .EEEEE-S CS B3 92 lvvkvfrk 99 l+v+++r+ Cc02_g11300 214 LCVGIRRA 221 9****997 PP | |||||||
2 | Auxin_resp | 113.9 | 1.4e-37 | 262 | 345 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++Fev+Y+Prast+eFvvk++ v++a++++++ GmRfkm fetedss++++ +Gtv++v+ dp++WpnS+Wr+L+ Cc02_g11300 262 AANLAASGQAFEVIYYPRASTPEFVVKASAVKAAIRIQWCSGMRFKMPFETEDSSRISWfMGTVSSVQVDDPIHWPNSPWRLLQ 345 7899******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.2E-37 | 112 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-31 | 115 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.74E-22 | 119 | 220 | No hit | No description |
PROSITE profile | PS50863 | 13.155 | 120 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.6E-22 | 120 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-21 | 120 | 221 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.0E-32 | 262 | 345 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.634 | 582 | 662 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 669 aa Download sequence Send to blast |
MNSGNEPMNE VEKSLDPQLW HACAGGMVQM SPVNSKVFYF PQGHAEHAHK SVDFGTFCRI 60 PPLILCRVSS IKYLADTETD EVFAKIRLAP LRGNECSDDD GDDGLLAFDK NDGQEKPSSF 120 AKTLTQSDAN NGGGFSVPRY CAETIFPRLD YSAEPPVQTI LAKDVHGEIW KFRHIYRGTP 180 RRHLLTTGWS NFVNQKKLVA GDSIVFLRAE NGDLCVGIRR AKRGIGGEEE NRIMRNPKGG 240 TNNSDIGARG RGKVRAESVV EAANLAASGQ AFEVIYYPRA STPEFVVKAS AVKAAIRIQW 300 CSGMRFKMPF ETEDSSRISW FMGTVSSVQV DDPIHWPNSP WRLLQVAWDE PDLLQNVKRV 360 SPWLVELVSN MPAINLSPFS PPRKKLRLPQ PPEFPLVGQL PMPSLFSNPL SPSSPLCCLP 420 DKIPAGIQGA RHAQFGLPSS EPHFNKLQAG LFPFKLKQLE HAAAAASRIP NSSCFMEDYE 480 SKDNVSCVLT IGNSVQGSKP NVRTEAPLFV LFGQPILTEQ QISQSSSGDT ARSSLSERNP 540 ENTVTVSGGS GSGVLQSGHP ENSLDQVLPW YKDPKLEFGL ETGHCKVFME SEDVGRTLDL 600 SVFGSYEELY GKLAEMFGLE RSEMLSNVLY QDPAGVVKHS GDEPFSDFLK AARRITILTD 660 SGSDNVGR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 9e-79 | 15 | 366 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104977.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_027104978.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_027104979.1 | 0.0 | auxin response factor 18 | ||||
Refseq | XP_027162063.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A068TUQ3 | 0.0 | A0A068TUQ3_COFCA; Auxin response factor | ||||
STRING | XP_009784518.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA592 | 24 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
---|---|---|---|
|