PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g09550 | ||||||||
Common Name | GSCOC_T00029643001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 232aa MW: 26437.2 Da PI: 6.9028 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.8 | 2.9e-09 | 30 | 73 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ Ed+l+ +a ++ + +W +Ia +++ g+t+++++ ++ Cc02_g09550 30 TWTKYEDKLFEQALVGFPEDlpnRWQKIADRVP-GKTAEDVRVHY 73 6*************9999999999*********.********998 PP | |||||||
2 | Myb_DNA-binding | 41.7 | 2.7e-13 | 138 | 182 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G g+W++I+r + +Rt+ q+ s+ qky Cc02_g09550 138 PWTEEEHRLFLIGLDRYGRGDWRSISRNVVVTRTPTQVASHAQKY 182 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.4E-7 | 27 | 79 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.9E-11 | 30 | 83 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.19E-8 | 30 | 73 | No hit | No description |
Pfam | PF00249 | 4.1E-8 | 30 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.108 | 31 | 77 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-5 | 31 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.283 | 131 | 187 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.66E-16 | 133 | 187 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-16 | 134 | 186 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 8.0E-11 | 135 | 181 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-10 | 135 | 185 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.98E-9 | 138 | 182 | No hit | No description |
Pfam | PF00249 | 2.8E-11 | 138 | 182 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MYNSPNDGNN NTNQSWVMYN SAPPHPPVVT WTKYEDKLFE QALVGFPEDL PNRWQKIADR 60 VPGKTAEDVR VHYDALVHDV REIEAGRVEL PNYADEDEFF GWGEPEQPPP ESRTPNQISF 120 GASGKAKHGD GERKKGTPWT EEEHRLFLIG LDRYGRGDWR SISRNVVVTR TPTQVASHAQ 180 KYYLRQTSGK KERKRSSIHD ITTPLESKTV APPSNFPNQA GYQNFSFPEQ R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-14 | 31 | 93 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00055 | PBM | Transfer from AT5G04760 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104730.1 | 1e-169 | transcription factor DIVARICATA-like | ||||
Refseq | XP_027111292.1 | 1e-169 | transcription factor DIVARICATA | ||||
Refseq | XP_027161713.1 | 1e-169 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-57 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A068TV40 | 1e-171 | A0A068TV40_COFCA; Uncharacterized protein | ||||
STRING | XP_009796939.1 | 1e-89 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4547 | 22 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 1e-73 | MYB family protein |
Publications ? help Back to Top | |||
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