PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g09010
Common Name46C02.12, CCERF1, GSCOC_T00029714001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 235aa    MW: 26371.1 Da    PI: 4.6179
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g09010genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-1891141356
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+++AeIrd + ng   r+++g+f++aeeAa  +++a+ +l+g+
  Cc02_g09010  91 YRGVRRRP-WGKYAAEIRDSTRNG--VRVWIGTFDSAEEAALVYDQAAFALRGH 141
                  9*******.**********44465..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-2890149IPR001471AP2/ERF domain
PfamPF008475.0E-1390141IPR001471AP2/ERF domain
CDDcd000182.35E-2990149No hitNo description
PROSITE profilePS5103222.64290148IPR001471AP2/ERF domain
SMARTSM003801.3E-3490154IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-2291150IPR016177DNA-binding domain
PRINTSPR003678.7E-1091102IPR001471AP2/ERF domain
PRINTSPR003678.7E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDYSSFPQHS FAEFSPESSA SSSMYCYNSQ HCQSSLPFNE NDSQEMLLAR VISEAAGSGN  60
SMDAPSSSRI KEEEECTQQN DYDEPMNQVN YRGVRRRPWG KYAAEIRDST RNGVRVWIGT  120
FDSAEEAALV YDQAAFALRG HAAVLNFPVE VVYESLKQMQ YGFEEGCSPV LVMKKRHSMN  180
RRNALSKKRS QVLMGLDDDN NNNVLVLEDL GTDYLEELLG ASESTSSSCP WRHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-28901501474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU1645370.0EU164537.1 Coffea canephora BAC 41C02, genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027109793.11e-174ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-63ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLC0ILP41e-175C0ILP4_COFCA; Uncharacterized protein CCERF1
STRINGEMJ074865e-73(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-57ethylene response factor 1
Publications ? help Back to Top
  1. Guyot R, et al.
    Microcollinearity in an ethylene receptor coding gene region of the Coffea canephora genome is extensively conserved with Vitis vinifera and other distant dicotyledonous sequenced genomes.
    BMC Plant Biol., 2009. 9: p. 22
    [PMID:19243618]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  4. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]