PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g08900 | ||||||||
Common Name | GSCOC_T00029731001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 906aa MW: 102457 Da PI: 5.4629 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.2 | 9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Cc02_g08900 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.9 | 1.5e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Cc02_g08900 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.76E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 4.2E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 6.47E-21 | 33 | 107 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 2.93E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.5E-55 | 406 | 649 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 906 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPGEDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRQR KRKRRGIDYN AEIPFEKKPP PGFYDVTDED RPVEQPKFPT 240 TIEELEGERR VDREARLRKQ DAARNKIAER QDAPSAIMQA NKLNDPEAVR RRSKLNLPAP 300 QIPDHELEAI AKIGIASDII GSEELTEGNA ATRALLASYA QTPQGGMTPL RTPHRTPAGK 360 QDAIMMEAEN QRRLSQSQTP LLGGDNPVLH PSDFSGVTPR KKEIQTPNPL LTPSATPGGP 420 GLTPRIGMTP SRDGYSFGTT PKGTPIRDEL RINEDMEMHD SVKLRQADSR KELLSGLKNL 480 PQPKNEYQIV TQPIPEDNEE PEEKIEEDMS DRLAREKAEE EARQQALLKK RSKVLQRELP 540 RPPVASLDLI RTSLIRSDED KSSFVPPTLI EQADEMIRKE LLSLLEHDNA KYPHDEKVKK 600 EKKKGTKRKA ASVPVIEDFE ENEMKEADSL IKDEAEFLRL ALGHESASVD EFVEVHKTCL 660 DDVMYFPNRR GYGLSSVANN MEKLAALQNE FECVKKTMDD DTKKAQGLER RIKVLTDGYQ 720 MRAGKLWSQV EAIYKQMDTA ETELKCFQAL QVQEHLAASN RINTLWEEVQ KQKELESTLQ 780 KRFGDLLAQK EKIQNLLEEH RAKAQVQEEI AAENAAPELP KDEDSSIGNE TMDVDVIPEV 840 ATPSSSDTTE VPEMVKEQLG EARGELSSKA FVEEDHADVS DVKPQRGMNG PVQGTEEVVD 900 ASVTA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 795 | 3 | 800 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDVRQRKRKRR |
2 | 198 | 204 | QRKRKRR |
3 | 199 | 204 | RKRKRR |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104648.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A068TV99 | 0.0 | A0A068TV99_COFCA; Uncharacterized protein | ||||
STRING | XP_009631530.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6139 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
---|---|---|---|
|