PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g07960

Common Name

GSCOC_T00029870001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 336aa MW: 36050.2 Da PI: 8.0773

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g07960	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.8	5.6e-39	69	129	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e+alkcprC+s+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Cc02_g07960 69 PEAALKCPRCESANTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 129 67899*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	5.0E-32	53	118	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-32	72	127	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	73	127	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	75	111	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MVFSSVPVYL DPPNWPQQQN PQQVAGDGEN SQFPPPLMPP PPPPGAGGTA SIRPGSMAER 60 ARLAKLPQPE AALKCPRCES ANTKFCYFNN YSLTQPRHFC KTCRRYWTRG GALRNVPVGG 120 GCRRNKRSKG SRSKSPMTSD NQSSNSTSTS GVSTNNSCST DVMSHLPPPP PLSFFPPLHN 180 LADFSNVDIG MSFGGIHPTV TTRPGAGSEI EFQIGNTLGA GPLNLSSRFA DQWRLQQVQQ 240 LPFLGGLEHS AAAGVYHLEG EVIDQPLGYD GVTTDQLTSK TLEAHGGSVK LEENHQGLNL 300 SRNFLSIPGN DQYWSTTANA WTDLSGSTSS ASHLM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027104470.1	0.0	dof zinc finger protein DOF3.6-like isoform X2
TrEMBL	A0A068TV03	0.0	A0A068TV03_COFCA; Uncharacterized protein
STRING	XP_010253200.1	1e-108	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1917	24	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02460.1	1e-38	Dof family protein