PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g07650
Common NameGSCOC_T00029909001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 725aa    MW: 81429.1 Da    PI: 6.5975
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g07650genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.12.4e-1193517211374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+a++++d + a+++L+++++++sp+gd mqRla+yf+ +L+ar+a+s++++ykal + +ts    +++l+a++l+  ++P+ k+s++  
  Cc02_g07650 351 LRTLLTLCAQAIAADDRRTANEFLKQIRQHCSPTGDGMQRLAKYFADGLEARMAGSGTQIYKALITMPTS---AADVLKAYQLYLAACPFRKISNFFS 445
                  5789************************************************************999999...9************************ PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I  a+e+ +++HiiDf+i +G+QWp+L+q L+sR++gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef + +a+++e++++e+L
  Cc02_g07650 446 NKTIWHAAEKGSTLHIIDFGILYGFQWPCLIQRLSSRSGGPPKLRITGIDLPHPGfrPAERVEETGRRLANYAETFKVPFEFVA-IAQKWETVRIEDL 542
                  *****************************************************9999***************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E+laVn+ +++ +llde+v ++s+r+ vL+l+++++P+v+v+   +  +n++ F++rf eal +ys++fd+lea++pre +er+ +E+ ++gr
  Cc02_g07650 543 KIREDEVLAVNCLYRMRNLLDETVVVNSPRNIVLNLIRKMKPDVFVLGIVNGAYNAPFFVTRFREALFHYSSFFDMLEANVPREIHERMLLEKTIFGR 640
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  e++nv+ace aer+er et+++W  r  +aGF+++pl+e+++  ak     +++d + ++e+s++l++gWk+r L+++S+W+
  Cc02_g07650 641 EAMNVIACEAAERVERPETYKQWLVRNLRAGFRQLPLNEDIMRMAKERAVSYDKD-FVIDEDSQWLLQGWKGRILYALSSWT 721
                  ****************************************************977.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.914325702IPR005202Transcription factor GRAS
PfamPF035148.3E-117351721IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MVMDGNSRVG YGTTSGIELN DEGVSVVPNP NLIGSLRLDG NVVERNYASR LSVQSHLYPN  60
VFVPLSSGDS NEDYDFSDAV LKYINDMLME EEMEDKGCMF QESAALQAAE KSFYDVLGEK  120
YPPPDHQVPS SNLRVSSREE SYPGGYGGLI WCPSWNNDTS GSDSTYVQHF SPYSSSNSSG  180
TVADGHIDSP DSILRISDIF SDSQSAMQFK KGVEEASKFL PNGNALLVDS QENGLLDKVQ  240
KKWPMTVKVE RSENGYSPDE SRGKKNPLHE DLQQQGGRSN KQSAVFTEST VRSDLFDKVL  300
LCSEGRNESD LRKALQDMAV KNVPQNNKLK GSSGGKSRSK KQGAKRNVVD LRTLLTLCAQ  360
AIAADDRRTA NEFLKQIRQH CSPTGDGMQR LAKYFADGLE ARMAGSGTQI YKALITMPTS  420
AADVLKAYQL YLAACPFRKI SNFFSNKTIW HAAEKGSTLH IIDFGILYGF QWPCLIQRLS  480
SRSGGPPKLR ITGIDLPHPG FRPAERVEET GRRLANYAET FKVPFEFVAI AQKWETVRIE  540
DLKIREDEVL AVNCLYRMRN LLDETVVVNS PRNIVLNLIR KMKPDVFVLG IVNGAYNAPF  600
FVTRFREALF HYSSFFDMLE ANVPREIHER MLLEKTIFGR EAMNVIACEA AERVERPETY  660
KQWLVRNLRA GFRQLPLNED IMRMAKERAV SYDKDFVIDE DSQWLLQGWK GRILYALSSW  720
TPAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-5535872226380Protein SCARECROW
5b3h_A7e-5535872225379Protein SCARECROW
5b3h_D7e-5535872225379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027163454.10.0scarecrow-like protein 14
RefseqXP_027163455.10.0scarecrow-like protein 14
RefseqXP_027163456.10.0scarecrow-like protein 14
RefseqXP_027163457.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A068TVQ00.0A0A068TVQ0_COFCA; Uncharacterized protein
STRINGXP_009611175.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27624191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]