PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g07090
Common NameGSCOC_T00039268001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 420aa    MW: 45469.1 Da    PI: 6.1356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g07090genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.1e-175499147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd  l ++v ++G ++W +Iar ++ gR++k+c++rw + 
      Cc02_g07090 54 RGPWSPEEDAVLTRLVSKFGARNWGLIARGIP-GRSGKSCRLRWCNQ 99
                     89******************************.***********985 PP
2Myb_DNA-binding55.31.6e-17106150147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r+++T eEd++++ a++ +G++ W++Ia+ +  gRt++ +k++w++ 
      Cc02_g07090 106 RKPFTDEEDQIIISAHAIHGNK-WASIAKLLS-GRTDNAIKNHWNST 150
                      789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.04349100IPR017930Myb domain
SuperFamilySSF466891.91E-3051147IPR009057Homeodomain-like
SMARTSM007176.3E-1553102IPR001005SANT/Myb domain
PfamPF002494.7E-165499IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2655107IPR009057Homeodomain-like
CDDcd001673.44E-145698No hitNo description
PROSITE profilePS5129425.946101155IPR017930Myb domain
SMARTSM007171.4E-16105153IPR001005SANT/Myb domain
PfamPF002492.3E-15106150IPR001005SANT/Myb domain
CDDcd001672.06E-12108151No hitNo description
Gene3DG3DSA:1.10.10.601.7E-24108154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MTSAPEENGL KVNSAVVDVD QAVVVDGCGD AMEGTTDDTG GGASGSGGRS GRVRGPWSPE  60
EDAVLTRLVS KFGARNWGLI ARGIPGRSGK SCRLRWCNQL DPGVKRKPFT DEEDQIIISA  120
HAIHGNKWAS IAKLLSGRTD NAIKNHWNST LKRRFSSMSQ NEMIQDGSID TLVASSGETM  180
SPGLINSLNS PKEEYISPME EIPRQTEGKD PMNGDQFYSD NCQCNVSERN QHCIGEKNSS  240
NIHRPVARIG AFNIYNPSGS DYALPRTTPM QGPLIRASTP DFGFFTYMEG ELDEPVIPLQ  300
CSHGCCRSSG LGSSLKKSSL LGPEFVEYEE LPPCSGHELA AIATDLNNIA WIKSGLENSL  360
RVPETASGPM VPRTVPVQMN AHEHALQPLH FDKVQHQSRG IMTNVFPAKM PLPTCIFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-40531576110B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110879.10.0transcription factor MYB1
TrEMBLA0A068V2F90.0A0A068V2F9_COFCA; Uncharacterized protein
STRINGXP_009781248.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.12e-90myb domain protein 109