PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g06940
Common NameGSCOC_T00039248001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 279aa    MW: 31289.4 Da    PI: 9.7179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g06940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.2e-082470347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE +++  a ++   +   +W ++a++++ g++  ++++ +q +
      Cc02_g06940 24 KWTKEENKRFESALAMIDEKspdRWYRVAAMIP-GKSVCDVINQYQEL 70
                     8********************************.***********976 PP
2Myb_DNA-binding39.71.2e-12122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + + +G+g+W+ I+r +   +t+ q+ s+ qky
      Cc02_g06940 122 PWTEEEHRRFLMGLQAHGKGDWRNISRNFVISKTPTQVASHAQKY 166
                      7*****************************789***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.4931771IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.3E-41871IPR009057Homeodomain-like
SMARTSM007172.3E-62173IPR001005SANT/Myb domain
SuperFamilySSF466891.36E-102377IPR009057Homeodomain-like
CDDcd001674.98E-52471No hitNo description
PfamPF002491.4E-62470IPR001005SANT/Myb domain
PROSITE profilePS5129417.715114171IPR017930Myb domain
SuperFamilySSF466892.58E-16117170IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-17118170IPR006447Myb domain, plants
SMARTSM007176.9E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-10120166IPR009057Homeodomain-like
PfamPF002491.1E-10122166IPR001005SANT/Myb domain
CDDcd001676.15E-9122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
METLYPASYI VNSDLLLKEL KSTKWTKEEN KRFESALAMI DEKSPDRWYR VAAMIPGKSV  60
CDVINQYQEL VADVNDIEAG LVPVPGYLAS SFTLELMDNR GGFATFRKRG RSIDQERKKG  120
IPWTEEEHRR FLMGLQAHGK GDWRNISRNF VISKTPTQVA SHAQKYFLRQ LSGGKDKKRP  180
SIHDITTVQL PNKTPSEDNK SPSPDKSGLS PVQKSTNASK MLFDWNNSND GVLMVFDSLD  240
PNESIGSLFD IATQGRYAAG IRSANSKFHI QPTKYVLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106118RKRGRSIDQERKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027110847.10.0transcription factor DIVARICATA-like
RefseqXP_027110848.10.0transcription factor DIVARICATA-like
SwissprotQ8S9H73e-88DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A068V2E50.0A0A068V2E5_COFCA; Uncharacterized protein
STRINGVIT_13s0019g03370.t011e-118(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-88MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]