PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g06420
Common NameGSCOC_T00039175001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 679aa    MW: 73329.6 Da    PI: 7.3728
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g06420genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.57.6e-06268288526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++f +  tC  Gd C +aHg
  Cc02_g06420 268 PCPDFKK-ATCAKGDACEYAHG 288
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.0E-1436151IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.45E-1347150IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-872144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.03577147IPR020683Ankyrin repeat-containing domain
SMARTSM002480.05877107IPR002110Ankyrin repeat
CDDcd002046.61E-1279150No hitNo description
PROSITE profilePS5008811.968112147IPR002110Ankyrin repeat
SMARTSM002480.0016112144IPR002110Ankyrin repeat
SMARTSM003560.0088263289IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.7E-4267289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.836268290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-4295326IPR000571Zinc finger, CCCH-type
SMARTSM0035642298321IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.596298322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MCFGSKSKPC PSDMDMDGKF QAKRGGDVGQ NCSKLLELSA TDDLAGFISE VEEKGCDVNE  60
LSFWYGRTIG TKKMGFEERT PILIASMYGS TKVLKYIVQS GKVDVNRAYG SDGVTALHCA  120
AAGGSDSSVE SVKLLLDASA DVNSLDANGN RSGDLIVSCV KSLSNSKRKA MEMLLKGIAS  180
EAVDVGEEQG NARAQSKEGV EKKEYPIDVS LPDINIGIYG SDEFRMYSFK VKPCSRAYSH  240
DWTECPFVHP GENARRRDPR KYHYSCVPCP DFKKATCAKG DACEYAHGVF ESWLHPAQYR  300
TRLCKDETGC SRKVCFFAHK AEELRPLYAS TGSAMPSPKS VAITSMDMAT LSPLTLGSSS  360
MLMPTTSTPP MSPSTACSSP LGTSMWQNKM NLTPPTLQLP GSRLKTALNA RDLDLELELL  420
GLESIRTQQQ QRQQLIDEMA GLASPSHWNN NRIGDLKPTN LDDVFGSLDP SLLSHLQRLS  480
PKVPASSSSQ LQSPTGIQMR QNMNQLRVSY PANVSSSPAR KSSTLGFDSS AAVAAAVMNS  540
RSAAFAKRSQ SFIDRGAGSQ RAGLSSFSSS QNMMASKVSD WGSPDGKLDW GFNGDDINKL  600
RKSASFGFRN GNAAAAAATK GMSPSVDEPD VSWVNSLVKD VPSTNAGLYS SEQKHGGFND  660
ILPSWIDQLY IEQEQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104317.10.0zinc finger CCCH domain-containing protein 29-like
RefseqXP_027110784.10.0zinc finger CCCH domain-containing protein 29-like
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A068V0110.0A0A068V011_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000698880.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein