PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g06230 | ||||||||
Common Name | GSCOC_T00039149001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 357aa MW: 38087.4 Da PI: 6.0238 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 75 | 124 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+WvAeIr+p++ r+r +lg+f tae+Aa+a+++a+ l+g Cc02_g06230 75 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 124 59****999.**********954...5999*******************98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.3E-37 | 75 | 138 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 75 | 133 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.01E-20 | 75 | 132 | No hit | No description |
Pfam | PF00847 | 2.6E-11 | 75 | 120 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-29 | 75 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.339 | 75 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 76 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.6E-10 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010353 | Biological Process | response to trehalose | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0010896 | Biological Process | regulation of triglyceride catabolic process | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0032880 | Biological Process | regulation of protein localization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 357 aa Download sequence Send to blast |
MSNSTADHLT SHLSQDTDPT LNYSISNNNN SDNATAAAAN ATTTSSGSDL SSGSTSSNNN 60 KKGKGKGGPD NNKFRYRGVR QRSWGKWVAE IREPRKRTRR WLGTFATAED AARAYDRAAI 120 ILYGSRAQLN LQPSSGTGGE SGGAPSDQSS SRSSNSSSST QNLRPLLPRP SGFGLTFYSA 180 PASLPVAGGV VAGYAPYGYY PATVQQYPNM VQCQQNLALQ EPQPQRQQPE EYRTSTTARC 240 HDMNVVLGIV DSSSYITTTS GANPNHEQQQ QEQQYCHNPS KLLYDEVNSL VGSVGSSLSL 300 CCTQTVAAAP APSVSECSDP TVSGCPGSPP LWPLTNDDEY PPTSIWDYGD PSVFDF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-18 | 76 | 131 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101339.1 | 0.0 | ethylene-responsive transcription factor ABI4-like | ||||
Refseq | XP_027108651.1 | 0.0 | ethylene-responsive transcription factor ABI4-like | ||||
TrEMBL | A0A068V0A1 | 0.0 | A0A068V0A1_COFCA; Uncharacterized protein | ||||
STRING | XP_006486528.1 | 1e-71 | (Citrus sinensis) | ||||
STRING | XP_006435774.1 | 1e-71 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40220.1 | 1e-23 | ERF family protein |