PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g06160

Common Name

GSCOC_T00039141001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 387aa MW: 43339.7 Da PI: 8.9723

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g06160	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.1	7.4e-32	77	130	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +F++ave+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Cc02_g06160 77 PRLRWTPELHLCFIHAVERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 130 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-29	73	131	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.608	73	133	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-15	74	131	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.9E-23	77	132	IPR006447	Myb domain, plants
Pfam	PF00249	9.4E-10	78	129	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MKESSCSTED SKTSPTTNQR LEDDEEDHED DDHQEDMNNN SAKPNINGTS SSNSTVEENS 60 KKPASGSVRQ YIRSKTPRLR WTPELHLCFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH 120 VKSHLQMYRS KKIDDPNQVI SEQRLLADSG DHNIYNLSKL PMLQAFDHFS SSGSLRYGNT 180 FWNSRQTNYH GPYNYGGAPS NFTRHGFGTA DKFFGRNNVG HLYGSHEFNA ARQSSWRNIL 240 ANENETQFFS GQRPWRTQSG TGTSSNVKPS LMSQLHDRGR SEQINADFRG PLSPGKKPHA 300 VQEGINLLKR KASADSDMNL DLNLSLPTPR QTDERDNRRL KVDGTDNSLS LSLFPSSTTL 360 SSRNLEEIHG NTRKHARTAS TLDLTL*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MKESSCSTED SKTSPTTNQR LEDDEEDHED DDHQEDMNNN SAKPNINGTS SSNSTVEENS  60
KKPASGSVRQ YIRSKTPRLR WTPELHLCFI HAVERLGGQD RATPKLVLQL MNIKGLSIAH  120
VKSHLQMYRS KKIDDPNQVI SEQRLLADSG DHNIYNLSKL PMLQAFDHFS SSGSLRYGNT  180
FWNSRQTNYH GPYNYGGAPS NFTRHGFGTA DKFFGRNNVG HLYGSHEFNA ARQSSWRNIL  240
ANENETQFFS GQRPWRTQSG TGTSSNVKPS LMSQLHDRGR SEQINADFRG PLSPGKKPHA  300
VQEGINLLKR KASADSDMNL DLNLSLPTPR QTDERDNRRL KVDGTDNSLS LSLFPSSTTL  360
SSRNLEEIHG NTRKHARTAS TLDLTL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	78	132	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027104293.1	0.0	uncharacterized protein LOC113725354
Refseq	XP_027110759.1	0.0	uncharacterized protein LOC113730326
TrEMBL	A0A068UZK8	0.0	A0A068UZK8_COFCA; Uncharacterized protein
STRING	XP_009791663.1	5e-81	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8573	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	6e-46	G2-like family protein