PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g05970 | ||||||||
Common Name | GSCOC_T00039118001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 356aa MW: 38918.9 Da PI: 4.3247 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 80 | 130 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr++ +g+WvAeIr+p + r r +lg+fgta eAa a+++a+++++g Cc02_g05970 80 CNYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFGTAVEAALAYDEAARSMYG 130 56*****999.**********8...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.4E-14 | 80 | 130 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.82E-31 | 80 | 139 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.2E-30 | 81 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.73E-20 | 81 | 138 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-35 | 81 | 144 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.863 | 81 | 138 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 82 | 93 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-9 | 104 | 120 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 356 aa Download sequence Send to blast |
MALLDQVSSV ASVPMDYSRK RKSRRRDGTN NVADTLAKWK EYNDKLDSLD EEGKVVRKVP 60 AKGSKKGCMK GKGGPENARC NYRGVRQRTW GKWVAEIREP NRGSRLWLGT FGTAVEAALA 120 YDEAARSMYG PCARLNLPNY GPQQEASIES SSFPATSASD STTTSGLSEV CPPADRDAEP 180 NSNVKEEDGE GESRIQDTRP LTWVGAGSPM CTVKEEPKDG HMEALDMSIQ AEAPVKNETF 240 NSSDEPLDTL AWDEMFDIDE MLSTLNSGPT HGSGSQYELV GINGGQFLNG NMQPSEFLYQ 300 MQNPDAKVLG SCQNMEQTSQ GVDYGFDFLE PGREENSQFA LDDLGFFDLD ADLGI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-17 | 81 | 138 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 17 | 22 | SRKRKS |
2 | 18 | 26 | RKRKSRRRD |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00302 | DAP | Transfer from AT2G40340 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027104260.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
Refseq | XP_027110725.1 | 0.0 | dehydration-responsive element-binding protein 2C-like | ||||
TrEMBL | A0A068UZW4 | 0.0 | A0A068UZW4_COFCA; Uncharacterized protein | ||||
STRING | XP_009764492.1 | 1e-102 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3701 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40340.1 | 9e-41 | ERF family protein |