PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g05410

Common Name

GSCOC_T00039049001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bZIP

Protein Properties

Length: 361aa MW: 39522.6 Da PI: 6.136

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g05410	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.5e-10	160	212	5	57
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + Cc02_g05410 160 KRAKRILANRQSAARSKERKARYINELERKVQTLQTEATTLSAQLTLFQRDTT 212 9****************************************999877666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.1E-16	156	220	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	158	221	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-10	160	214	No hit	No description
SuperFamily	SSF57959	1.2E-10	160	211	No hit	No description
Pfam	PF00170	1.6E-8	160	209	IPR004827	Basic-leucine zipper domain
CDD	cd14703	1.70E-23	161	210	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MQDPNVGNAK QQQGNQAAPF AFRPTHHRRA HSEVNFRLPE DLDLVPDPFD VPAGTSFDEM 60 GSEDDLFSTY MDIEKLGGSN NSNSNNNNNN VNDGDNAGGA CLPHSGADGE KSLPPGTMRP 120 RHRYSNSVDS SSLLLNESSI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SAARSKERKA 180 RYINELERKV QTLQTEATTL SAQLTLFQRD TTGLTTENTE LKLRLQAMEQ QAQLRDALNE 240 ALKQEVERLR IATGEISGPS DAYHLGMQHV PYSQSFFSHQ AQPGPGDSQS PQMAPFNPLQ 300 ANMSNRHPSL LAPAQMHSFS DALQQDPLGR FQGLDIGSRT SHTVKSEGPS LSASESSSTF 360 *

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MQDPNVGNAK QQQGNQAAPF AFRPTHHRRA HSEVNFRLPE DLDLVPDPFD VPAGTSFDEM  60
GSEDDLFSTY MDIEKLGGSN NSNSNNNNNN VNDGDNAGGA CLPHSGADGE KSLPPGTMRP  120
RHRYSNSVDS SSLLLNESSI EAKKAMAPDK LAELWTIDPK RAKRILANRQ SAARSKERKA  180
RYINELERKV QTLQTEATTL SAQLTLFQRD TTGLTTENTE LKLRLQAMEQ QAQLRDALNE  240
ALKQEVERLR IATGEISGPS DAYHLGMQHV PYSQSFFSHQ AQPGPGDSQS PQMAPFNPLQ  300
ANMSNRHPSL LAPAQMHSFS DALQQDPLGR FQGLDIGSRT SHTVKSEGPS LSASESSSTF  360
*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027162855.1	0.0	transcription factor RF2b
Swissprot	O22873	1e-114	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A068UZE2	0.0	A0A068UZE2_COFCA; Uncharacterized protein
STRING	VIT_13s0067g02900.t01	1e-155	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3425	23	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-97	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]