PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g04740
Common NameGSCOC_T00020396001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 265aa    MW: 28482.8 Da    PI: 7.5028
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g04740genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62e-20119169255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+++AeIrdps+ng  +r++lg++ taeeAa a+++a+ +++g
  Cc02_g04740 119 HFRGVRQRP-WGKFAAEIRDPSKNG--ARVWLGTYETAEEAALAYDRAAYRMRG 169
                  69*******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.2E-32118178IPR001471AP2/ERF domain
CDDcd000186.36E-30119178No hitNo description
PfamPF008477.3E-15119169IPR001471AP2/ERF domain
PROSITE profilePS5103223.907119177IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-23119179IPR016177DNA-binding domain
SMARTSM003804.5E-38119183IPR001471AP2/ERF domain
PRINTSPR003672.0E-10120131IPR001471AP2/ERF domain
PRINTSPR003672.0E-10143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MYHPISAELP PANSSGEFPA YRGSCSFSSL VPCLTETWGD LPLKVDDPED MVIYWILRDA  60
VNVGWSPFNL TASSDVSVDV RVKAEPSDAT EPATTSPAAD HCSAPPPAAA GAAQPKGRHF  120
RGVRQRPWGK FAAEIRDPSK NGARVWLGTY ETAEEAALAY DRAAYRMRGS KALLNFPHRV  180
GLNEPEPVRV TAKRRSPEQA ASSSSSVSSA SESGSPSPSP KRRRKVVAAE LSAEPEPEVE  240
SQSNAYRVNC RKTHVPVGEQ LLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-37116184270ATERF1
3gcc_A9e-37116184270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219225PKRRRKV
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7435490.0KF743549.1 Coffea arabica ERF transcription factor 10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027104027.10.0ethylene-responsive transcription factor 2-like
SwissprotQ404791e-111ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLA0A068UA050.0A0A068UA05_COFCA; Uncharacterized protein
STRINGXP_009606945.11e-109(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.13e-47ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]