PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g03660 | ||||||||
Common Name | GSCOC_T00020257001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 251aa MW: 28473.8 Da PI: 5.988 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.4 | 2.3e-12 | 99 | 149 | 1 | 53 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53 +r++h +Er RR+++ + f+ Lr llP ++K s ++ + +Av+YI + Cc02_g03660 99 KRTSHRDVERLRRQEMANLFASLRNLLPLeY---IKGKRSMSDQVHQAVNYITH 149 7****************************77...******************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.57E-12 | 95 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.09E-9 | 96 | 155 | No hit | No description |
PROSITE profile | PS50888 | 12.862 | 98 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.2E-9 | 99 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.3E-9 | 99 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDDFTSSLIP LQQDDDSQLF PYDLTIPTIH PYLDDTIHHQ DLGNQAASSL APHQQQHYDQ 60 VTSIDDDDNN NHHPKGRQRK KPSSAIPADN NDPDDSKQKR TSHRDVERLR RQEMANLFAS 120 LRNLLPLEYI KGKRSMSDQV HQAVNYITHK EKNIRELKVK RDKLRNLMGG SSDLNVKSVE 180 ETNSSSTTFT VKQCESGGIE ILMKNDLAGN CFPLSRVLDM LLDEGLNVVN CVCTKVDEKF 240 LYTIQTEVQL * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 110 | KRTSHRDVERLRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101320.1 | 0.0 | transcription factor bHLH36-like | ||||
TrEMBL | A0A068UAH6 | 0.0 | A0A068UAH6_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51780.1 | 2e-36 | bHLH family protein |