PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g03430
Common NameDREB1D, GSCOC_T00020227001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 234aa    MW: 25511.6 Da    PI: 5.3857
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g03430genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.7e-1865115155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+G+r++  +g+Wv+e+r+p   +k+ r++lg+f tae+Aa+a++ a+ +l+g
  Cc02_g03430  65 PVYRGIRRRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 115
                  68*****888.8******9998...347*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1365115IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-2166125IPR016177DNA-binding domain
SMARTSM003801.1E-3066129IPR001471AP2/ERF domain
PROSITE profilePS5103222.56366123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-3266125IPR001471AP2/ERF domain
CDDcd000181.00E-3167125No hitNo description
PRINTSPR003674.4E-96778IPR001471AP2/ERF domain
PRINTSPR003674.4E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNHFSTCYSD PIPNPSSPDF PDSSSTSDNV VNACKANYSD EEVLLASNNP KKRAGRKKFR  60
ETRHPVYRGI RRRNSGKWVC EVREPNKKSR IWLGTFPTAE MAARAHDVAA IALRGRSACL  120
NFADSAWRLP VPESPEPKHI QKAAAEAAEA FRPSESCDGV SSGASGDHAN KEECGSVAFP  180
ENVFFMDEEA VFGMPGLIAN MAEGLMLPPP QCAVGDDLEL EANADMFLWS YSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-15641221271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00557DAPTransfer from AT5G51990Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2812830.0KM281283.1 Coffea canephora clone UW002_2-1 dehydration-responsive element-binding protein 1D (DREB1D) gene, DREB1D-2 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101318.11e-173dehydration-responsive element-binding protein 1B-like
SwissprotQ9FJ937e-78DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A068UAP61e-172A0A068UAP6_COFCA; Dehydration-responsive element-binding protein 1D
TrEMBLA0A0N7BV021e-172A0A0N7BV02_COFAR; Dehydration-responsive element-binding protein 1D
STRINGPOPTR_0012s13870.18e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.13e-76C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  3. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  4. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  5. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]