PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g03430 | ||||||||
Common Name | DREB1D, GSCOC_T00020227001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25511.6 Da PI: 5.3857 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.7e-18 | 65 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r++ +g+Wv+e+r+p +k+ r++lg+f tae+Aa+a++ a+ +l+g Cc02_g03430 65 PVYRGIRRRN-SGKWVCEVREP---NKKSRIWLGTFPTAEMAARAHDVAAIALRG 115 68*****888.8******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.0E-13 | 65 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.51E-21 | 66 | 125 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-30 | 66 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.563 | 66 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-32 | 66 | 125 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.00E-31 | 67 | 125 | No hit | No description |
PRINTS | PR00367 | 4.4E-9 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-9 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MNHFSTCYSD PIPNPSSPDF PDSSSTSDNV VNACKANYSD EEVLLASNNP KKRAGRKKFR 60 ETRHPVYRGI RRRNSGKWVC EVREPNKKSR IWLGTFPTAE MAARAHDVAA IALRGRSACL 120 NFADSAWRLP VPESPEPKHI QKAAAEAAEA FRPSESCDGV SSGASGDHAN KEECGSVAFP 180 ENVFFMDEEA VFGMPGLIAN MAEGLMLPPP QCAVGDDLEL EANADMFLWS YSI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-15 | 64 | 122 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM281283 | 0.0 | KM281283.1 Coffea canephora clone UW002_2-1 dehydration-responsive element-binding protein 1D (DREB1D) gene, DREB1D-2 allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027101318.1 | 1e-173 | dehydration-responsive element-binding protein 1B-like | ||||
Swissprot | Q9FJ93 | 7e-78 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A068UAP6 | 1e-172 | A0A068UAP6_COFCA; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A0N7BV02 | 1e-172 | A0A0N7BV02_COFAR; Dehydration-responsive element-binding protein 1D | ||||
STRING | POPTR_0012s13870.1 | 8e-99 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 3e-76 | C-repeat/DRE binding factor 1 |
Publications ? help Back to Top | |||
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