PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g03420
Common NameGSCOC_T00020226001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 248aa    MW: 26239 Da    PI: 4.153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g03420genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-1672121155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++++GVr  +++g+Wv+eIr+p++   ++r++lg++ t+e+Aa+a++aa ++l+g
  Cc02_g03420  72 PHFRGVR--SRSGKWVSEIREPRK---TTRIWLGTYPTPEMAAAAYDAATLALKG 121
                  689***6..668*********843...5*********************999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-1072121IPR001471AP2/ERF domain
CDDcd000183.33E-1772131No hitNo description
SMARTSM003804.4E-2873135IPR001471AP2/ERF domain
PROSITE profilePS5103219.87573129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.3E-2773130IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1873130IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MLESDQPNNS LRPDDPDPDD PPQPKEQPKP TGIIATASGS NTCECPPPPS QPSPSATIPS  60
PTGSGGPSRR HPHFRGVRSR SGKWVSEIRE PRKTTRIWLG TYPTPEMAAA AYDAATLALK  120
GPDAILNFPE LAPTYPIPAS LSAADVRAAA ASAAAAREPP QEPAVLDQAP ATSPRDPVEI  180
NEDVNASTSG DNQMGQDQFV DEEELFDMPN LLVDMAEGML VSPPRMKPAV SGESPENSDA  240
DNLWSYP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1363130473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027101317.11e-177ethylene-responsive transcription factor ERF027-like
SwissprotQ9FJ904e-55ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A068UCA41e-176A0A068UCA4_COFCA; Uncharacterized protein
STRINGSolyc06g035700.1.11e-64(Solanum lycopersicum)
STRINGXP_010278525.12e-64(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-46ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]