PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g03050
Common NameGSCOC_T00020175001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 292aa    MW: 32627.7 Da    PI: 6.419
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g03050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.9e-151562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l+ ++ ++G g+W+++a   g+ R +k+c++rw +yl
      Cc02_g03050 15 KGLWSPDEDLKLKSYILKHGHGCWSSVAVNAGLQRNGKSCRLRWINYL 62
                     678*******************************************97 PP

2Myb_DNA-binding48.71.7e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+e ++ ++ +lG++ W+  a++m+ gRt++++k++w++yl
      Cc02_g03050  68 RGMFSVEEEETILTLHGMLGNK-WAQMAQHMP-GRTDNEIKNYWHSYL 113
                      7889******************.*********.************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.1E-221065IPR009057Homeodomain-like
PROSITE profilePS5129416.1851062IPR017930Myb domain
SuperFamilySSF466891.61E-2813109IPR009057Homeodomain-like
SMARTSM007171.2E-111464IPR001005SANT/Myb domain
PfamPF002491.2E-131562IPR001005SANT/Myb domain
CDDcd001675.84E-101862No hitNo description
PROSITE profilePS5129423.83463117IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-2466117IPR009057Homeodomain-like
SMARTSM007171.4E-1367115IPR001005SANT/Myb domain
PfamPF002493.4E-1468113IPR001005SANT/Myb domain
CDDcd001674.73E-1071113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGCKHADKPK QKHKKGLWSP DEDLKLKSYI LKHGHGCWSS VAVNAGLQRN GKSCRLRWIN  60
YLRPGLKRGM FSVEEEETIL TLHGMLGNKW AQMAQHMPGR TDNEIKNYWH SYLKKKVAKI  120
GETEAQAKAE KSSSASCLES SPSSMKSNPP TSTIESTEQL ESSLMSDAEQ SVSQCQMDLP  180
REACRSNLPR VLFAEWLSLD QFRDQNCESS GNPVVATNNL VYYNSDFQDS FMHDLLLNEG  240
TFGGGNHQGL SNGAVDDILP PALKFEDQIL ENSFVDFING RFSLTSDDLY L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-23151177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102186.10.0transcription factor LAF1-like
SwissprotQ9M0K47e-59LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A068U9S20.0A0A068U9S2_COFCA; Uncharacterized protein
STRINGXP_009629823.11e-119(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.12e-56myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]