PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g02540 | ||||||||
Common Name | GSCOC_T00020111001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 706aa MW: 76609.9 Da PI: 8.0589 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 341.5 | 1.4e-104 | 336 | 705 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 + + ++A a+s+g +e+a+++L+rl + a+p+g++ qRl+ay+t AL++r++ + p + +e ++e+ ++++++evsP++k+++ +aN Cc02_g02540 336 QSIADVALAISEGRMEAATEVLTRLAQVANPRGTSEQRLTAYMTSALRSRVNP-----TD-Y-PPPVTELYTAEHSDSTQMLYEVSPCFKLGFTAANL 426 567889**********************************************9.....22.2.2222334588999999******************* PP GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 aI ea++ge ++H+iDfdi+qG+Q+ Ll+ La+ + ++p l+iT+++++ ++ +e+l++++ +L+ +A++lgv ++ +v ++ r+ +l+ e+ Cc02_g02540 427 AIQEAISGEqpaGKLHVIDFDIGQGGQYEHLLHLLATMKaDKPSVLKITTLVDSVNNgGEERLRAVRGNLEALANKLGVCLSLRV-TSLRIGELNREK 523 *********888899*********************665267779*****99987778**************************9.999********* PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 L v+++EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv++veqe+ n+++F++r+ ea+ yy l+dslea+++r+ +r+ +E+ +g Cc02_g02540 524 LGVESDEALAVNFAFRLYRLPDESVTTENLRDELLRRVKWLSPKVVTLVEQEMGANTAPFVTRVKEACAYYGLLLDSLEATVGRDRPDRVRIEEG-VG 620 ***********************************************************************************************.** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r++ n vaceg++r+er+e ++kWr+r+++aGF+ p+s+++ ++ ++ l+ v +g++v+e+sg +++gW++r+L+++SaWr Cc02_g02540 621 RKLANSVACEGRDRVERCEVFGKWRARMSMAGFELKPMSQTVGDSLRSKLHSVTrgIQGFTVNEQSGGVCFGWMGRTLTVASAWR 705 ***************************************************99877899*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.704 | 308 | 683 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.9E-102 | 336 | 705 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MSSGFSGGGG PDFFTSSGIA TGRSTNPMMP TMNMNMNVTN PSQLPYRSAL AGILPDPAAQ 60 IVHRGPDLIG KRSLTEFQQQ HQLLQQQQQQ HQQQMGGLGP LYSNLRNVKP RVNYQHASPI 120 SPLSPVDLSV ISSLSPEASS ISNSSSPMNP RYGRPILQQF RPQQQLQQPQ PQPPRMMSNC 180 GLTATASLSN GNIIQPASSG GMPNQPNKFI PSNISSSSSV SFPNLFHNQR AVVPMPMPVG 240 MVTPGKQLFS APQDQTEKKM MNKLQELEKQ LFDDDDEGGC GGDAVSVVTN SEWSDTIHSL 300 NMITTTNCKA ISPSPTSSSS SCSSTSASPP IACPKQSIAD VALAISEGRM EAATEVLTRL 360 AQVANPRGTS EQRLTAYMTS ALRSRVNPTD YPPPVTELYT AEHSDSTQML YEVSPCFKLG 420 FTAANLAIQE AISGEQPAGK LHVIDFDIGQ GGQYEHLLHL LATMKADKPS VLKITTLVDS 480 VNNGGEERLR AVRGNLEALA NKLGVCLSLR VTSLRIGELN REKLGVESDE ALAVNFAFRL 540 YRLPDESVTT ENLRDELLRR VKWLSPKVVT LVEQEMGANT APFVTRVKEA CAYYGLLLDS 600 LEATVGRDRP DRVRIEEGVG RKLANSVACE GRDRVERCEV FGKWRARMSM AGFELKPMSQ 660 TVGDSLRSKL HSVTRGIQGF TVNEQSGGVC FGWMGRTLTV ASAWR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 7e-40 | 331 | 705 | 9 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027103725.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A068U9C2 | 0.0 | A0A068U9C2_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400026240 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4023 | 24 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52510.1 | 1e-146 | SCARECROW-like 8 |