PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g02540
Common NameGSCOC_T00020111001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 706aa    MW: 76609.9 Da    PI: 8.0589
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g02540genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS341.51.4e-1043367053374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  + + ++A a+s+g +e+a+++L+rl + a+p+g++ qRl+ay+t AL++r++       +   p + +e  ++e+  ++++++evsP++k+++ +aN 
  Cc02_g02540 336 QSIADVALAISEGRMEAATEVLTRLAQVANPRGTSEQRLTAYMTSALRSRVNP-----TD-Y-PPPVTELYTAEHSDSTQMLYEVSPCFKLGFTAANL 426
                  567889**********************************************9.....22.2.2222334588999999******************* PP

         GRAS 101 aIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                  aI ea++ge    ++H+iDfdi+qG+Q+  Ll+ La+ + ++p  l+iT+++++ ++  +e+l++++ +L+ +A++lgv ++ +v ++ r+ +l+ e+
  Cc02_g02540 427 AIQEAISGEqpaGKLHVIDFDIGQGGQYEHLLHLLATMKaDKPSVLKITTLVDSVNNgGEERLRAVRGNLEALANKLGVCLSLRV-TSLRIGELNREK 523
                  *********888899*********************665267779*****99987778**************************9.999********* PP

         GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                  L v+++EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv++veqe+  n+++F++r+ ea+ yy  l+dslea+++r+  +r+ +E+  +g
  Cc02_g02540 524 LGVESDEALAVNFAFRLYRLPDESVTTENLRDELLRRVKWLSPKVVTLVEQEMGANTAPFVTRVKEACAYYGLLLDSLEATVGRDRPDRVRIEEG-VG 620
                  ***********************************************************************************************.** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++ ++ ++ l+ v    +g++v+e+sg +++gW++r+L+++SaWr
  Cc02_g02540 621 RKLANSVACEGRDRVERCEVFGKWRARMSMAGFELKPMSQTVGDSLRSKLHSVTrgIQGFTVNEQSGGVCFGWMGRTLTVASAWR 705
                  ***************************************************99877899*************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.704308683IPR005202Transcription factor GRAS
PfamPF035144.9E-102336705IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSSGFSGGGG PDFFTSSGIA TGRSTNPMMP TMNMNMNVTN PSQLPYRSAL AGILPDPAAQ  60
IVHRGPDLIG KRSLTEFQQQ HQLLQQQQQQ HQQQMGGLGP LYSNLRNVKP RVNYQHASPI  120
SPLSPVDLSV ISSLSPEASS ISNSSSPMNP RYGRPILQQF RPQQQLQQPQ PQPPRMMSNC  180
GLTATASLSN GNIIQPASSG GMPNQPNKFI PSNISSSSSV SFPNLFHNQR AVVPMPMPVG  240
MVTPGKQLFS APQDQTEKKM MNKLQELEKQ LFDDDDEGGC GGDAVSVVTN SEWSDTIHSL  300
NMITTTNCKA ISPSPTSSSS SCSSTSASPP IACPKQSIAD VALAISEGRM EAATEVLTRL  360
AQVANPRGTS EQRLTAYMTS ALRSRVNPTD YPPPVTELYT AEHSDSTQML YEVSPCFKLG  420
FTAANLAIQE AISGEQPAGK LHVIDFDIGQ GGQYEHLLHL LATMKADKPS VLKITTLVDS  480
VNNGGEERLR AVRGNLEALA NKLGVCLSLR VTSLRIGELN REKLGVESDE ALAVNFAFRL  540
YRLPDESVTT ENLRDELLRR VKWLSPKVVT LVEQEMGANT APFVTRVKEA CAYYGLLLDS  600
LEATVGRDRP DRVRIEEGVG RKLANSVACE GRDRVERCEV FGKWRARMSM AGFELKPMSQ  660
TVGDSLRSKL HSVTRGIQGF TVNEQSGGVC FGWMGRTLTV ASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-403317059375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103725.10.0scarecrow-like protein 8
TrEMBLA0A068U9C20.0A0A068U9C2_COFCA; Uncharacterized protein
STRINGPGSC0003DMT4000262400.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-146SCARECROW-like 8