PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g01940
Common NameGSCOC_T00020034001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 391aa    MW: 43078.7 Da    PI: 4.3202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g01940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20132181255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+W+AeIrdps+   r+r +lg+f+taeeAa  +++a+ kl+g
  Cc02_g01940 132 KFRGVRQRP-WGKWAAEIRDPST---RARLWLGTFDTAEEAAMVYDNAAIKLRG 181
                  89*******.**********976...5*************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-30131189IPR001471AP2/ERF domain
CDDcd000183.62E-34132188No hitNo description
SuperFamilySSF541711.44E-21132189IPR016177DNA-binding domain
PROSITE profilePS5103223.512132189IPR001471AP2/ERF domain
PfamPF008475.7E-13132181IPR001471AP2/ERF domain
SMARTSM003802.5E-39132195IPR001471AP2/ERF domain
PRINTSPR003671.7E-10133144IPR001471AP2/ERF domain
PRINTSPR003671.7E-10155171IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVVRGFLCPV KYTEHRSLTK KLALKPKKSS ERSSIVPRTV RISVTDPDAT DSSSDEDELF  60
GRLRVKRYIS EIKIETAAVC QQNSNNVISA SSNALAPRHH PKKKTAEALQ AKQRPMKAKE  120
PPVPAAGGAV RKFRGVRQRP WGKWAAEIRD PSTRARLWLG TFDTAEEAAM VYDNAAIKLR  180
GPDALTNFVT PPAKEKPQVN VASTSCYESG EESHNLSSPT SVLRFRSSQS SEEAEPECRS  240
EGVEGPVPAD CTDEQTVQEE TDGEPWQEPV PEVAEECQGE TRDMIPDYSN EYMPMDVPFL  300
DNFFNFQSPE QITFDDTVPP SFSNDTFDLG LDVSFDDDLL PGFLDDTAAA GAGFGELNDS  360
FQDFGSVELN VDDYFQDMND FASADALLAV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-20131188159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00456DAPTransfer from AT4G27950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103619.10.0ethylene-responsive transcription factor CRF4-like
TrEMBLA0A068U9610.0A0A068U961_COFCA; Uncharacterized protein
STRINGXP_009596437.11e-134(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49423126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.17e-65cytokinin response factor 4