PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g01940 | ||||||||
Common Name | GSCOC_T00020034001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 391aa MW: 43078.7 Da PI: 4.3202 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.4e-20 | 132 | 181 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++GVr+++ +g+W+AeIrdps+ r+r +lg+f+taeeAa +++a+ kl+g Cc02_g01940 132 KFRGVRQRP-WGKWAAEIRDPST---RARLWLGTFDTAEEAAMVYDNAAIKLRG 181 89*******.**********976...5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.0E-30 | 131 | 189 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.62E-34 | 132 | 188 | No hit | No description |
SuperFamily | SSF54171 | 1.44E-21 | 132 | 189 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.512 | 132 | 189 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.7E-13 | 132 | 181 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.5E-39 | 132 | 195 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 133 | 144 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-10 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MVVRGFLCPV KYTEHRSLTK KLALKPKKSS ERSSIVPRTV RISVTDPDAT DSSSDEDELF 60 GRLRVKRYIS EIKIETAAVC QQNSNNVISA SSNALAPRHH PKKKTAEALQ AKQRPMKAKE 120 PPVPAAGGAV RKFRGVRQRP WGKWAAEIRD PSTRARLWLG TFDTAEEAAM VYDNAAIKLR 180 GPDALTNFVT PPAKEKPQVN VASTSCYESG EESHNLSSPT SVLRFRSSQS SEEAEPECRS 240 EGVEGPVPAD CTDEQTVQEE TDGEPWQEPV PEVAEECQGE TRDMIPDYSN EYMPMDVPFL 300 DNFFNFQSPE QITFDDTVPP SFSNDTFDLG LDVSFDDDLL PGFLDDTAAA GAGFGELNDS 360 FQDFGSVELN VDDYFQDMND FASADALLAV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 131 | 188 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00456 | DAP | Transfer from AT4G27950 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027103619.1 | 0.0 | ethylene-responsive transcription factor CRF4-like | ||||
TrEMBL | A0A068U961 | 0.0 | A0A068U961_COFCA; Uncharacterized protein | ||||
STRING | XP_009596437.1 | 1e-134 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 7e-65 | cytokinin response factor 4 |