PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g01210

Common Name

GSCOC_T00019934001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 311aa MW: 33857.5 Da PI: 8.3399

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g01210	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	33	94	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Cc02_g01210 33 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRSSS 94 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-30	26	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.0E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.171	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MDTTQWPQGI GLAKPIETPK PAAALEKKPR PQKEQALNCP RCNSTNTKFC YYNNYSLTQP 60 RYFCKTCRRY WTEGGTLRNV PVGGGSRKNK RSSSSTTSVS SLPPASSSEN KKLPDLSHLT 120 GTAPGFPQNP KTPEGQDLNL TYPPVRNYSA SLSGLMQLPN FNENKNLDPH LGNISSSISH 180 VPAAGLEFLK STSGISTGGF SSLLSMPLSD SNAIYSSSQQ LPMQEFKPKL SFSLDGFDNN 240 GTDYGSLHGV QVAENNNNNN SSRLFLPYEE LKPLSSVTCD QYNEHQQNRG QEGESAPNGY 300 WSGMLGGDSW *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027103530.1	0.0	dof zinc finger protein DOF4.6-like isoform X1
TrEMBL	A0A068U9P6	0.0	A0A068U9P6_COFCA; Uncharacterized protein
STRING	VIT_16s0098g01420.t01	2e-96	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	3e-55	Dof family protein