PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g21870

Common Name

GSCOC_T00004926001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 1030aa MW: 113945 Da PI: 7.1838

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g21870	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.6	1.1e-40	183	260	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adl++ak+yhrrhkvCe+hska+ +lv++++qrfCqqCsrfh+l+efDe+krsCrrrL +hn+rrrk+q+ Cc01_g21870 183 VCQVEDCKADLTKAKDYHRRHKVCEMHSKASRALVANVMQRFCQQCSRFHALQEFDEGKRSCRRRLTGHNKRRRKTQP 260 6**************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.0E-32	178	245	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.035	181	258	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	5.36E-38	182	263	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.8E-29	184	257	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	3.59E-9	758	910	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.6E-7	799	911	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.72E-8	800	910	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1030 aa Download sequence Send to blast
MEARTRLGLG GQAELLTRAV GSGDSKAAAN KRSNLEWDLN DWKWDEDLFL ATPLINSSST 60 TSPLINYHPQ QSTHFFPLET GGVNNHYHHR DVAAGSSSST SSSCSDEFKN LGGGVGAGSR 120 RELDKRRRVL VVRDDNLEDE AAPASLALKL NSRGGRDCYT PECERDASGK KTKAAATAAS 180 RAVCQVEDCK ADLTKAKDYH RRHKVCEMHS KASRALVANV MQRFCQQCSR FHALQEFDEG 240 KRSCRRRLTG HNKRRRKTQP DPMANETSSN DSQASGYLLM CIVKILSHIH SGKTNQTDDQ 300 ELLSHLLRSL GGHGALHGDK DISRLLQLPQ NFPNNGAEMV SALLANGTQG LPISKHPEMS 360 QNILHNRDVQ VEDLPTSSSQ PTQSSVAYVQ VNENHVERNK LNNFDLNDAY IDLEAAIEDL 420 ERSPVPVDVA PSNLEYHSWM RQNSHQSSPP QTSGNSDSAS APSPSSSSAD ARSRTDRIVF 480 KLFGKQPSDF PGSLRGQILD WLSHSPTDIE SYIRPGCIVL TIYLCTSVLA WEELSHNLGS 540 SLSRLLNVSD DGSFWRTGWI YARVQNRIVF ICSRIVVETS LPSQSSYYGA IVSVKPIAVP 600 PSERAEFTIT GVNLSRPSTR ILGALRGTYV LFEDNGQSLE RIDSFKEHDE LQCLNFACSI 660 PVVTGRGFLE LEDLGLSSSF FPFIVAEKDV CSEIRMLESE MELPETDCLG VKTESRKLAM 720 DFIHEFGWLL HRSQLKSKLG HSDQNSHPFA FTRFKWIIQF SADHGWCAVV KKLLDLLLDG 780 NIGAREQLLL SSAMFEMGLL HRAVRRNSRP LVELLLRYVP ERIANELSLE YASLVGSEGS 840 PLFRPDAVGP AGLTPLHVAA GTDGSEDVLN ALTNDPGQVA VEAWKNARDN NGFTPEDYAR 900 LRGHYSYVHL VRRKIHKKIL VGHVAVVDIS NAVSSGWTKQ NEGEEARKTS FEIARSEIGS 960 AGLHRCRLCD RKFVATGGGN GSPLYRPGML SMVAIAAVCV CVALLFKSSP EVLFVFRPFR 1020 WEMLDYGSW*

Sequence ? help Back to Top

Protein Sequence Length: 1030 aa Download sequence Send to blast

MEARTRLGLG GQAELLTRAV GSGDSKAAAN KRSNLEWDLN DWKWDEDLFL ATPLINSSST  60
TSPLINYHPQ QSTHFFPLET GGVNNHYHHR DVAAGSSSST SSSCSDEFKN LGGGVGAGSR  120
RELDKRRRVL VVRDDNLEDE AAPASLALKL NSRGGRDCYT PECERDASGK KTKAAATAAS  180
RAVCQVEDCK ADLTKAKDYH RRHKVCEMHS KASRALVANV MQRFCQQCSR FHALQEFDEG  240
KRSCRRRLTG HNKRRRKTQP DPMANETSSN DSQASGYLLM CIVKILSHIH SGKTNQTDDQ  300
ELLSHLLRSL GGHGALHGDK DISRLLQLPQ NFPNNGAEMV SALLANGTQG LPISKHPEMS  360
QNILHNRDVQ VEDLPTSSSQ PTQSSVAYVQ VNENHVERNK LNNFDLNDAY IDLEAAIEDL  420
ERSPVPVDVA PSNLEYHSWM RQNSHQSSPP QTSGNSDSAS APSPSSSSAD ARSRTDRIVF  480
KLFGKQPSDF PGSLRGQILD WLSHSPTDIE SYIRPGCIVL TIYLCTSVLA WEELSHNLGS  540
SLSRLLNVSD DGSFWRTGWI YARVQNRIVF ICSRIVVETS LPSQSSYYGA IVSVKPIAVP  600
PSERAEFTIT GVNLSRPSTR ILGALRGTYV LFEDNGQSLE RIDSFKEHDE LQCLNFACSI  660
PVVTGRGFLE LEDLGLSSSF FPFIVAEKDV CSEIRMLESE MELPETDCLG VKTESRKLAM  720
DFIHEFGWLL HRSQLKSKLG HSDQNSHPFA FTRFKWIIQF SADHGWCAVV KKLLDLLLDG  780
NIGAREQLLL SSAMFEMGLL HRAVRRNSRP LVELLLRYVP ERIANELSLE YASLVGSEGS  840
PLFRPDAVGP AGLTPLHVAA GTDGSEDVLN ALTNDPGQVA VEAWKNARDN NGFTPEDYAR  900
LRGHYSYVHL VRRKIHKKIL VGHVAVVDIS NAVSSGWTKQ NEGEEARKTS FEIARSEIGS  960
AGLHRCRLCD RKFVATGGGN GSPLYRPGML SMVAIAAVCV CVALLFKSSP EVLFVFRPFR  1020
WEMLDYGSW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	183	257	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	124	128	KRRRV

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027164233.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_027164242.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A068V8Q1	0.0	A0A068V8Q1_COFCA; Uncharacterized protein
STRING	EOX95415	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]