PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g21250
Common NameGSCOC_T00005003001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 439aa    MW: 48104.3 Da    PI: 4.8224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g21250genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.3e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l ++++  G g+W++ ++  g+ R++k+c++rw +yl
      Cc01_g21250 14 RGRWTAEEDEILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding57.72.6e-1867112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+el++++++ lG++ W++Ia +m+ gRt++++k++w+++l
      Cc01_g21250  67 RGNITAEEEELIINLHASLGNR-WSLIAGHMP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21564IPR009057Homeodomain-like
PROSITE profilePS5129416.078961IPR017930Myb domain
SuperFamilySSF466899.17E-2911108IPR009057Homeodomain-like
SMARTSM007172.9E-121363IPR001005SANT/Myb domain
PfamPF002494.2E-141461IPR001005SANT/Myb domain
CDDcd001671.18E-91661No hitNo description
PROSITE profilePS5129426.39162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-2565116IPR009057Homeodomain-like
SMARTSM007175.9E-1766114IPR001005SANT/Myb domain
PfamPF002497.5E-1667112IPR001005SANT/Myb domain
CDDcd001677.75E-1371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MGRAPCCEKV GIKRGRWTAE EDEILTKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRSDLKRGNI TAEEEELIIN LHASLGNRWS LIAGHMPGRT DNEIKNYWNS HLSRQLHKFK  120
KPDSESSVPP GPLQPAAEVM DLVVEHGGGE VSKKRKGSRT NGSNMRKNRR STNPSQPKEL  180
AGPAAATVQM PRTPTLEEET LSSAVSLEEG GTSKFVVSSS LMTDACPKRE RRQNLASTGT  240
TSDECTPEVG ETKSSVMLQP EGGLMTSGSD GAVGLDSGML CLDEMMNIGD PDGILTFHGN  300
TSTKETCSET AATNVERRCD NMDPGCYTTR ASSIVDDQEE TDKLGKMDVS KGRNQIGCTS  360
PAHEDHHDGK LDDWDDWQWD EPVVQNNLTT LPGEEADLLS WLWDSDNNNN YLNSSGNFDD  420
GAGMDDEKHN AMVAWLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-21141164105MYB PROTO-ONCOGENE PROTEIN
1h88_C3e-21141288159MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-21141288159MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-211211625128MYB TRANSFORMING PROTEIN
1mse_C1e-21141164105C-Myb DNA-Binding Domain
1msf_C1e-21141164105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027118337.10.0transcription factor MYB12-like
TrEMBLA0A068VBM90.0A0A068VBM9_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.15e-76myb domain protein 12