PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g21090
Common NameGSCOC_T00005023001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 329aa    MW: 36336.3 Da    PI: 6.7766
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g21090genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-1987135355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ ++k++g
  Cc01_g21090  87 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDKEARKIRG 135
                  9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.80286143IPR001471AP2/ERF domain
SMARTSM003802.9E-3986149IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-2286144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-3286144IPR001471AP2/ERF domain
CDDcd000186.92E-3387144No hitNo description
PRINTSPR003678.9E-128798IPR001471AP2/ERF domain
PfamPF008479.8E-1287135IPR001471AP2/ERF domain
PRINTSPR003678.9E-12109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MCGGAILEGL IPPRNNNDGT RRLSSADLWP SAPDFWPNSH LAKPSRSNPT DAPHKATHET  60
CHDPHDEAGG KQQVLPKGAK RQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE  120
EAARAYDKEA RKIRGKKAKV NFPNEDSTSH PTCIPSQPQY QQVHIPSPPT FCGPSSSNCK  180
FNQLRVGSSD CNASDCYHAN SIDDCVRFNN MMGFRNPSEE VSGSGSSDNE CFLGHLKQVA  240
KAAEEEAASV ITENDTKDNN KAAESEEYQV EKLSEELLAY ESFMKFYQIP YIDGQSAAAS  300
ANPAQELATS IQLWSFDDVS PANRPMPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-21871451574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5225050.0AY522505.1 Coffea canephora ERF-like transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027118119.10.0ethylene-responsive transcription factor RAP2-3-like isoform X2
RefseqXP_027118126.10.0ethylene-responsive transcription factor RAP2-3-like
TrEMBLA0A068V9B80.0A0A068V9B8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA71182329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-43ethylene-responsive element binding protein