PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g20510

Common Name

GSCOC_T00015924001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HB-other

Protein Properties

Length: 1046aa MW: 114839 Da PI: 7.2551

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g20510	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	18.3	4e-06	71	127	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + ++++e +e+++ g+t +qV+ +F +Ra+ +k Cc01_g20510 71 KRPRDLLNPKAIKYMQSIFSVKDAITKKETREISALYGVTATQVREFFTVQRARVRK 127 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.216	68	128	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-6	70	131	IPR009057	Homeodomain-like
SMART	SM00389	0.0039	70	132	IPR001356	Homeobox domain
CDD	cd00086	8.75E-4	71	127	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.4E-5	71	127	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.20.930.10	1.7E-4	227	318	IPR017923	Transcription factor IIS, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1046 aa Download sequence Send to blast
MELQLANENQ LELVVSNSPT SLQDLLDSQT DLFRGQIDEL ENIVLTQCQL TGVNPLSQEM 60 AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDAITKKET REISALYGVT ATQVREFFTV 120 QRARVRKFVR LSREKSNRSS SCKEVLDGIP QGCDPNEPLT PVPLDSVGPT STEEGPTSLT 180 QNEVLPSADQ SDKYFLDNIF SLMRKEESFS GQVKLMEWIL QIQNSSVLYW FLNNGGVMIL 240 ATWLTQAALE EQTSVLRVIL KVLCHLPLQK ALPVHMSAIL QSVNSLRFYR ISDVSNRARV 300 LLSRWSKAFA RSQALRKSNG TKSAIDAQDE MLLKQSIHEV MGNESWDSKI DVLEDNSTLM 360 DESLGNFRKL ESQPAKLLTA SADDQNRKLI RGALASQNRE RRKVLLVEQP GQKSAGRTTQ 420 TARSTTAPQG RPLSADDIQK AKMRAQFMQS KYGKTNSISD ASPQMQLEGA NKSALSNTSI 480 LVPPSKAHTG TKIEETNKSG CSPVGVANPE DASVDKQNNC HSEEPPWKKC KRFQIPWQIP 540 PEIGISVSWR VGAGENSKEV EVQKKRIHRE RETVYKTFQE IPSDPKEPWD QEIDYDDSLT 600 AEIPIEQLPD GEFAGASVSP RENERTAGTS GNSSSLIAGG SMPEPDLELL AALLKNPELV 660 FALTSGQAGN LSNEETIKLL DMIKANEMNS LANITASSGK SKPEEKVEVS LPSPTPSSDP 720 VTSARKPDYA KNPFSQQKTT LTNEILGIPG TAAIRSQESV PASNVVQSHN LPTGAMVAEP 780 STTFPQLAQH AIPHALLSEE KLRASGLVQP QVLPATVLAP QQAATVQQLA QQMAPQVLGS 840 HEQRLLPLTS SLHHNIPAYA SNAQLKSSSE LLLNMNNTSL SRSPPLTNSM NGVAPAMVVN 900 PSSMSLVGSP LRPQTQMQPS YAPEAPLAHS WRPRPGLDPI SRQNNVTPDE YEAFVGASAR 960 APVARSSWEK NDLMVGPDFE SWSPENSPTR SHGYVPGWNV QEPMVNPGQS YRPERPIYRH 1020 AGYPPSSGYH DPGISGTKRW RDRRR*

Sequence ? help Back to Top

Protein Sequence Length: 1046 aa Download sequence Send to blast

MELQLANENQ LELVVSNSPT SLQDLLDSQT DLFRGQIDEL ENIVLTQCQL TGVNPLSQEM  60
AAGALSIKIG KRPRDLLNPK AIKYMQSIFS VKDAITKKET REISALYGVT ATQVREFFTV  120
QRARVRKFVR LSREKSNRSS SCKEVLDGIP QGCDPNEPLT PVPLDSVGPT STEEGPTSLT  180
QNEVLPSADQ SDKYFLDNIF SLMRKEESFS GQVKLMEWIL QIQNSSVLYW FLNNGGVMIL  240
ATWLTQAALE EQTSVLRVIL KVLCHLPLQK ALPVHMSAIL QSVNSLRFYR ISDVSNRARV  300
LLSRWSKAFA RSQALRKSNG TKSAIDAQDE MLLKQSIHEV MGNESWDSKI DVLEDNSTLM  360
DESLGNFRKL ESQPAKLLTA SADDQNRKLI RGALASQNRE RRKVLLVEQP GQKSAGRTTQ  420
TARSTTAPQG RPLSADDIQK AKMRAQFMQS KYGKTNSISD ASPQMQLEGA NKSALSNTSI  480
LVPPSKAHTG TKIEETNKSG CSPVGVANPE DASVDKQNNC HSEEPPWKKC KRFQIPWQIP  540
PEIGISVSWR VGAGENSKEV EVQKKRIHRE RETVYKTFQE IPSDPKEPWD QEIDYDDSLT  600
AEIPIEQLPD GEFAGASVSP RENERTAGTS GNSSSLIAGG SMPEPDLELL AALLKNPELV  660
FALTSGQAGN LSNEETIKLL DMIKANEMNS LANITASSGK SKPEEKVEVS LPSPTPSSDP  720
VTSARKPDYA KNPFSQQKTT LTNEILGIPG TAAIRSQESV PASNVVQSHN LPTGAMVAEP  780
STTFPQLAQH AIPHALLSEE KLRASGLVQP QVLPATVLAP QQAATVQQLA QQMAPQVLGS  840
HEQRLLPLTS SLHHNIPAYA SNAQLKSSSE LLLNMNNTSL SRSPPLTNSM NGVAPAMVVN  900
PSSMSLVGSP LRPQTQMQPS YAPEAPLAHS WRPRPGLDPI SRQNNVTPDE YEAFVGASAR  960
APVARSSWEK NDLMVGPDFE SWSPENSPTR SHGYVPGWNV QEPMVNPGQS YRPERPIYRH  1020
AGYPPSSGYH DPGISGTKRW RDRRR*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027178494.1	0.0	homeobox protein LUMINIDEPENDENS isoform X1
Swissprot	Q38796	1e-168	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A068U4N4	0.0	A0A068U4N4_COFCA; Uncharacterized protein
STRING	XP_009604664.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-165	HB-other family protein

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]