PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g19020

Common Name

GSCOC_T00016112001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 355aa MW: 40286.9 Da PI: 5.4904

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g19020	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	114	9.9e-36	43	134	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k++++++d+++++++sws+ g+sfvv+d++ f++ +Lp+yFkh+nf+SFvRQLn+YgF+k++ ++ weF+++ F +g+k+ll++i+ Cc01_g19020 43 FLTKTFDMVDDSTTDHIVSWSRGGHSFVVWDPHAFSTALLPRYFKHNNFSSFVRQLNTYGFRKIDPDK---------WEFANEAFLRGQKHLLRNIR 130 9**************************************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k Cc01_g19020 131 RRKA 134 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	3.4E-61	39	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	2.99E-36	39	132	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	1.7E-39	39	132	IPR011991	Winged helix-turn-helix DNA-binding domain
PRINTS	PR00056	6.8E-20	43	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.9E-32	43	132	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.8E-20	81	93	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	82	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.8E-20	94	106	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MDPLYPVKEE YPDQYHAGSS SSPPGTLAPQ PMEGLHDAGP PPFLTKTFDM VDDSTTDHIV 60 SWSRGGHSFV VWDPHAFSTA LLPRYFKHNN FSSFVRQLNT YGFRKIDPDK WEFANEAFLR 120 GQKHLLRNIR RRKAPSQPTS PQQALGPCVE VGRFGLDAEV DRLRRDKQVL MMELVKLRQQ 180 QQSTRAHLQS MEVRLQGTEK KQQHMMSFLA KAMQNPEFIH QLIQQKDKRK ELEEAFTKKR 240 PRPIDQGPGG GESSRSGEVR NHVKAEPSEF GDPYGYQVSE LEALALEMQG FGRAARRDRD 300 EEQDELDKEL DEGFWEELLN EGFDEEGETG KEGGGEEDVN VLADRFGSLG SSPK*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MDPLYPVKEE YPDQYHAGSS SSPPGTLAPQ PMEGLHDAGP PPFLTKTFDM VDDSTTDHIV  60
SWSRGGHSFV VWDPHAFSTA LLPRYFKHNN FSSFVRQLNT YGFRKIDPDK WEFANEAFLR  120
GQKHLLRNIR RRKAPSQPTS PQQALGPCVE VGRFGLDAEV DRLRRDKQVL MMELVKLRQQ  180
QQSTRAHLQS MEVRLQGTEK KQQHMMSFLA KAMQNPEFIH QLIQQKDKRK ELEEAFTKKR  240
PRPIDQGPGG GESSRSGEVR NHVKAEPSEF GDPYGYQVSE LEALALEMQG FGRAARRDRD  300
EEQDELDKEL DEGFWEELLN EGFDEEGETG KEGGGEEDVN VLADRFGSLG SSPK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-25	38	132	12	120	Heat shock factor protein 1
5d5u_B	1e-25	38	132	21	129	Heat shock factor protein 1
5d5v_B	1e-25	38	132	21	129	Heat shock factor protein 1
5d5v_D	1e-25	38	132	21	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	238	242	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00371	DAP	Transfer from AT3G22830	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027115041.1	0.0	heat stress transcription factor A-2b-like isoform X1
Swissprot	Q6VBB2	1e-129	HFA2B_ORYSJ; Heat stress transcription factor A-2b
Swissprot	Q9LUH8	1e-129	HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBL	A0A068U6A9	0.0	A0A068U6A9_COFCA; Uncharacterized protein
STRING	EOX94644	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA572	24	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22830.1	1e-121	heat shock transcription factor A6B

Publications ? help Back to Top
Rezaei MK,Shobbar ZS,Shahbazi M,Abedini R,Zare S Glutathione S-transferase (GST) family in barley: identification of members, enzyme activity, and gene expression pattern. J. Plant Physiol., 2013. 170(14): p. 1277-84 [PMID:23664583]