PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g18730
Common NameGSCOC_T00016162001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family WRKY
Protein Properties Length: 344aa    MW: 38318.5 Da    PI: 10.0351
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g18730genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.61.9e-31277334359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Cc01_g18730 277 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 334
                  9************************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.3E-18228273IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.2E-33263335IPR003657WRKY domain
PROSITE profilePS5081129.884270336IPR003657WRKY domain
SuperFamilySSF1182904.05E-27273335IPR003657WRKY domain
SMARTSM007749.4E-39275335IPR003657WRKY domain
PfamPF031062.4E-27277334IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MEEVEEANKA AIESCCRVLS LISQPQDQKQ YRNLAVETGE AVCKFKKVVS LLNSTLGHAR  60
VRKVKKIQTP FPPSILLENS ICRTDDQPKA LQLLRINSPD NPVQDSGSNV KSSLTLGNPS  120
LEFISHGKNT LQLAQQTPPP NYHILQQQQQ RYQLQQQQLK RQADMMYRRS NSGISLNFDS  180
STCTPTMSSA RSFISSLSID GSVANLDGNA FHLIGASRSA DQSTYQHKRR CSGRGEDGSV  240
KCGSSGRCHC SKKRKHRVKR SIKVPAISNK LADIPPDEYS WRKYGQKPIK GSPHPRGYYK  300
CSSMRGCPAR KHVERCLEEP SMLIVTYEGE HNHPRLPSQS ANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20268337775WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027095575.10.0probable WRKY transcription factor 21
SwissprotO043361e-123WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A068U8040.0A0A068U804_COFCA; Uncharacterized protein
STRINGXP_009618397.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32712350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-116WRKY DNA-binding protein 21