PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g18710 | ||||||||
Common Name | GSCOC_T00016165001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 185aa MW: 20845.6 Da PI: 9.4699 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 34 | 84 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GVr ++ +gr++AeIrd ++ ++r +lg+f+taeeAa a+++a+++l+g Cc01_g18710 34 SHFRGVRKRP-WGRYAAEIRDpWK----KTRRWLGTFDTAEEAALAYDEAARSLRG 84 78********.**********883....5999**********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.0E-13 | 34 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.89E-30 | 34 | 91 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-22 | 34 | 92 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-31 | 35 | 92 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-34 | 35 | 100 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.746 | 35 | 92 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 36 | 47 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-10 | 58 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MDVDHFHQEH NNANAAVRRG VQVTPSSLRV VKESHFRGVR KRPWGRYAAE IRDPWKKTRR 60 WLGTFDTAEE AALAYDEAAR SLRGPKAKTN FGSPALTPMS FTPPVMVQVP SVNPTGLAEN 120 FPHWCSPAFF ATDEADRSTE RAARSEYTGY KLETIGVMMS EREMDFKGEK KPFLFDLNLP 180 APLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-19 | 31 | 91 | 1 | 62 | ATERF1 |
3gcc_A | 1e-19 | 31 | 91 | 1 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF278735 | 0.0 | KF278735.1 Coffea arabica ethylene response factor 4 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095564.1 | 1e-135 | ethylene-responsive transcription factor 12-like | ||||
TrEMBL | A0A068U5A2 | 1e-134 | A0A068U5A2_COFCA; Uncharacterized protein | ||||
STRING | XP_009618026.1 | 5e-55 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14136 | 12 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28360.1 | 3e-25 | ERF domain protein 12 |