PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc01_g18390 | ||||||||
Common Name | GSCOC_T00016211001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29769.9 Da PI: 5.2081 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1e-18 | 133 | 184 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr+++ +g+++AeIrd + k r++lg+f++ae Aa a+++a+ +++g+ Cc01_g18390 133 SYRGVRRRP-WGKYAAEIRDsT--R-KGIRVWLGTFDSAEAAALAYDQAAFCMRGP 184 69*******.**********32..2.24**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.08E-20 | 132 | 193 | No hit | No description |
SuperFamily | SSF54171 | 7.19E-23 | 133 | 193 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.1E-39 | 133 | 197 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-30 | 133 | 191 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-13 | 133 | 183 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.248 | 133 | 191 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-10 | 134 | 145 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.3E-10 | 157 | 173 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MEANRSLFQF HDSIILDCPF ESSSSFDSPQ PHSFTPSSSS SSLSTSPSSS SWDEVLFQHN 60 CDFLPFNFND SQDMFLFDVL AEGAGASARD ASLRQSSSET NSNSNSNSNS SGGGVREEEV 120 TSNVTKETNK EKSYRGVRRR PWGKYAAEIR DSTRKGIRVW LGTFDSAEAA ALAYDQAAFC 180 MRGPMAVLNF PVDVVQESLR DMKCGSEGGG GGGCSPVVAL KQRHSIKKKK SSIRNHKIAR 240 EAAAKVENVV ILEDLGAEYL EELLNSSSEI PAAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-27 | 133 | 191 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027095183.1 | 1e-158 | ethylene-responsive transcription factor 1B-like | ||||
Refseq | XP_027102294.1 | 1e-158 | ethylene-responsive transcription factor 1B-like | ||||
Swissprot | A0A3Q7I5Y9 | 9e-69 | ERFC3_SOLLC; Ethylene-response factor C3 | ||||
TrEMBL | A0A068U635 | 0.0 | A0A068U635_COFCA; Uncharacterized protein | ||||
STRING | XP_009775978.1 | 3e-72 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 6e-37 | ethylene response factor 1 |
Publications ? help Back to Top | |||
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