PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc01_g18370

Common Name

GSCOC_T00016214001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 278aa MW: 31233.7 Da PI: 6.843

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc01_g18370	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++++ G g+W++ +++ g+ R++k+c++rw +yl Cc01_g18370 14 KGPWTKEEDQILISYINENGRGNWRALPKKAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	53.2	7.1e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++++++ lG++ W++Ia+t++ gRt++++k+ w+++l Cc01_g18370 67 RGNFTQEEEDTIIKLHQALGNR-WSAIAATLP-GRTDNEIKNVWHSHL 112 89******************.*****.*********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.559	9	61	IPR017930	Myb domain
SuperFamily	SSF46689	4.97E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	7.8E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	2.10E-11	16	61	No hit	No description
PROSITE profile	PS51294	24.43	62	116	IPR017930	Myb domain
SMART	SM00717	5.6E-13	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	7.44E-9	69	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.3E-27	69	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MGRAPCCEKM GLNKGPWTKE EDQILISYIN ENGRGNWRAL PKKAGLLRCG KSCRLRWTNY 60 LRPDIKRGNF TQEEEDTIIK LHQALGNRWS AIAATLPGRT DNEIKNVWHS HLKKRLIPQQ 120 DHQGQAVRKT QPEQGTNKAL SVEKPKFHCQ DSNSSPVKII VSKQEPGTNN QSSSLQYSSS 180 DDISSSLSFT DATTTTTIPD NPTEIYLTNS GDGDSVSNKH QELDQDIWHD VVSSQDHSLS 240 PVLHRGGCGF NPFTNDDINF WCDLFTRTED ISHLLEF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-28	12	116	25	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027095120.1	0.0	transcription factor MYB14-like
TrEMBL	A0A068U6F4	0.0	A0A068U6F4_COFCA; Myb-related protein Myb4-like
STRING	GLYMA19G34740.2	4e-81	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12	24	2154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-72	myb domain protein 15