PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc01_g17920
Common NameGSCOC_T00016264001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family G2-like
Protein Properties Length: 469aa    MW: 51507.3 Da    PI: 4.9059
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc01_g17920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like108.14.6e-34256310155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  k+r+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  Cc01_g17920 256 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 310
                  79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.165253313IPR017930Myb domain
SuperFamilySSF466893.4E-18254310IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-31255312IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-25256310IPR006447Myb domain, plants
PfamPF002492.8E-10258309IPR001005SANT/Myb domain
PfamPF143797.9E-26341388IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MEARPALSIQ RSGTQQLNNC GPSGALSTSF PVLPSALEEK YPNLPDSQQV PVERQFKPCT  60
STVVSPISFS SGVVGHMFSS SSGLSTDLHF SSVSQQEKHS RQSPFISQST SCGTSMLFQQ  120
ASHSGVLQST ASSQYTKENN DTSWCTDSLD FLDYPINQNN PLDSCNTGEI LPSEDLNKRN  180
WQEWADQLIS DDDALTSSWN ELIAETNVTD PGLKVPQQST TFSIQQPQAS QQLPASSGET  240
GPVVPPTPSG SGAPTKQRMR WTPELHEAFV EAVNKLGGSE RATPKGVLKL MKVEGLTIYH  300
VKSHLQKYRT ARYKPEPSEG SSEKKHALID DLSSLDLKSG IEITEALRLQ MEVQKRLHEQ  360
LEIQRNLQLR IEEQGRYLQM MFEKQCKSGL DLLKGSSSNL ENPLTDLTEP VLKSPDKSNL  420
GVSEGNDHKM DEVGEKQKSP ENEVPENLEA TATDTPNSPP PKRAKLDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A9e-33256314260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B9e-33256314260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A9e-33256314260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C9e-33256314260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D9e-33256314260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F9e-33256314260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H9e-33256314260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J9e-33256314260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027094398.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2
RefseqXP_027094407.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2
RefseqXP_027094416.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2
RefseqXP_027094424.10.0protein PHOSPHATE STARVATION RESPONSE 1-like isoform X2
TrEMBLA0A068U6I50.0A0A068U6I5_COFCA; Uncharacterized protein
STRINGMigut.D00466.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27532349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-92phosphate starvation response 1